PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22131A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 321aa    MW: 36364.5 Da    PI: 9.2733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22131AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.78.9e-22142203259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                                dDg++WrKYG K+  +s fpr YYrCt++   +C ++k+v+++ ++dp ++ +tY ++H+++
  Oropetium_20150105_22131A 142 DDGHQWRKYGEKKLSNSSFPRFYYRCTYKnemKCAATKQVQQKnTSDPPLFSVTYFNHHTCS 203
                                8***************************99999*******875167**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-6101125IPR003657WRKY domain
SuperFamilySSF1182901.26E-5101124IPR003657WRKY domain
PfamPF031065.2E-5107125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-22131203IPR003657WRKY domain
SuperFamilySSF1182907.59E-22134204IPR003657WRKY domain
PROSITE profilePS5081116.203136205IPR003657WRKY domain
SMARTSM007744.1E-32141204IPR003657WRKY domain
PfamPF031064.3E-24142202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEIAREQSL VTQLRAIVLP ALQGDQRSEL VAQMFQNILD CSSKGLQLLC QSDDASAHDK  60
LVDDKKRVRR ILDDCNKEDV KPHHNKYKRR RFCDDPVSLK TPVPHYDGHQ WRKYGQKNIN  120
KAKYSSGKEQ RSWTADTYAP YDDGHQWRKY GEKKLSNSSF PRFYYRCTYK NEMKCAATKQ  180
VQQKNTSDPP LFSVTYFNHH TCSTSSNPRG SHRGAGVQSS SKEAVSICFS SPSSSEQPTF  240
LTSAATTPSL NIQAYRANQQ LHQSDYVRQF QLTGTTNSPV KMEVDNFSEA TSSSSSSTSA  300
LSRTLLPIGQ SRCIEYFHFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-14142202968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22131A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827915.17e-91probable WRKY transcription factor 46 isoform X1
TrEMBLA0A2T7E4I61e-90A0A2T7E4I6_9POAL; Uncharacterized protein
STRINGPavir.J31578.1.p1e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-21WRKY DNA-binding protein 46