PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22130A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 342aa    MW: 37215.2 Da    PI: 5.8448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22130AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY345.7e-111341891559
                                -TT-SS-EEEEEE-ST...T---EEEEEE-SS........STTEEEEEEES--SS- CS
                       WRKY  15 vkgsefprsYYrCtsa...gCpvkkkversae........dpkvveitYegeHnhe 59 
                                ++g+ +prsYYrCt +   gCp+kk v+r+++         pk  +++Y  eH+++
  Oropetium_20150105_22130A 134 IEGAMYPRSYYRCTRSaeqGCPAKKTVQRNDDkegamndsSPKSYTVVYVAEHTCS 189
                                8999**********988889*********874222222114667788888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.8E-11133190IPR003657WRKY domain
PfamPF031068.3E-14133188IPR003657WRKY domain
SuperFamilySSF1182901.31E-10133190IPR003657WRKY domain
PROSITE profilePS5081111.233134163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-12134189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MPEMTLRRER ERELVAQLRE LLLPSPPTRT LKIRSGGARS TSMTTTDDPA MMMEMQVDER  60
RRHSGSKKRG RRAKDDDEAG VEPTPAVPNQ LLQQDSTCSK RSCRRKKKQQ CASLVTCVPD  120
XXXXXXXXXX XXXIEGAMYP RSYYRCTRSA EQGCPAKKTV QRNDDKEGAM NDSSPKSYTV  180
VYVAEHTCSA NDEGSTEAPV ILETTAAAPT STKDIDEQGP AAAFLPEAHR HGAAEVNVNA  240
AAASSTSSSP ATMSSITCMG TTDNESPSTS EVTWSSAANQ DHHVVDDLYY GDGLFAVDHR  300
SPSSLLVQDM DDFTGPIRSP VHVAAGGGWT ICEQYLLHLV S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22130A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586205e-42KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
GenBankKU0586325e-42KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-09WRKY DNA-binding protein 70