PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22098A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 331aa    MW: 36733.6 Da    PI: 7.8966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22098AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1003.3e-3158054128
                        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e+vg+kk Lvfy+g+ pkg+ktdW+mheyrl
  Oropetium_20150105_22098A   5 GENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSENVGVKKALVFYRGKPPKGVKTDWIMHEYRL 80 
                                578*************************************9989999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.9041116IPR003441NAC domain
SuperFamilySSF1019412.88E-383116IPR003441NAC domain
PfamPF023651.5E-14880IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
KALFGENEWY FFSPRDRKYP NGARPNRAAG SGYWKATGTD KAILSTPTSE NVGVKKALVF  60
YRGKPPKGVK TDWIMHEYRL TDASNTVNKK NAAKRRGSSS SSMRLDDWVL CRIYKKSNNF  120
QFSDPQEEQD GSTVEEAEPS LNNDNMNGSV ASPKSEETIY HATTDGLHQL FQNPQLSMTK  180
SCSLTDLLNT IDYTALFFDA PPETEPQHNR LIYTTASHQP PNNYNMNNNS MPQVDGALCS  240
DYGANSYNSL NRKRIMTASC FDDGGSSFTK KLPQLPSDSR SGTFFGGSSN YCNQQLAEAA  300
TATTSFQYSG LLSHPFLNQQ LLLNNHLGMQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48112165170NO APICAL MERISTEM PROTEIN
1ut4_B2e-48112165170NO APICAL MERISTEM PROTEIN
1ut7_A2e-48112165170NO APICAL MERISTEM PROTEIN
1ut7_B2e-48112165170NO APICAL MERISTEM PROTEIN
3swm_A2e-48112168173NAC domain-containing protein 19
3swm_B2e-48112168173NAC domain-containing protein 19
3swm_C2e-48112168173NAC domain-containing protein 19
3swm_D2e-48112168173NAC domain-containing protein 19
3swp_A2e-48112168173NAC domain-containing protein 19
3swp_B2e-48112168173NAC domain-containing protein 19
3swp_C2e-48112168173NAC domain-containing protein 19
3swp_D2e-48112168173NAC domain-containing protein 19
4dul_A2e-48112165170NAC domain-containing protein 19
4dul_B2e-48112165170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22098A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235195e-88AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAK0692575e-88AK069257.1 Oryza sativa Japonica Group cDNA clone:J023011O06, full insert sequence.
GenBankAP0149675e-88AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126195e-88CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankJN6735455e-88JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809798.11e-118NAC domain-containing protein 67-like
TrEMBLA0A2S3H5F31e-117A0A2S3H5F3_9POAL; Uncharacterized protein
STRINGSi026530m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-57NAC-like, activated by AP3/PI