PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22096A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 377aa MW: 40801.4 Da PI: 7.2501

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22096A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.2	3.9e-50	15	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrFhP+d+e+++ yL +k + +++ +++ +v+++++eP+dLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWk Oropetium_20150105_22096A 15 LPAGFRFHPRDDEIITSYLLPKFLNPSFSP-RAMGDVNLNQCEPRDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWK 97 799**********************999.88***********99999*************************** PP NAM 85 atgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129 atg+d+e++++ ++elvg+kktLvfy+grap+g+kt+Wvmhe+rle Oropetium_20150105_22096A 98 ATGRDREIFEQasagggGRELVGMKKTLVFYRGRAPRGSKTNWVMHEFRLE 148 ******98888877788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-57	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	53.949	15	173	IPR003441	NAC domain
Pfam	PF02365	7.9E-26	16	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGERGAKPEQ GGLFLPAGFR FHPRDDEIIT SYLLPKFLNP SFSPRAMGDV NLNQCEPRDL 60 PSKAKMGEKE WYFFCHKDMK YPTGMRTNRA TKEGYWKATG RDREIFEQAS AGGGGRELVG 120 MKKTLVFYRG RAPRGSKTNW VMHEFRLEGK SRHNADLHLR PKDEWVVCKV FNKDNEEDNK 180 KKAAAGEYSA GTPNVSSISA VDATSDEDDD PFINPTLHPM YFNSTSSLPD LTTIDDPWLG 240 PPYSAADYSI ASNAAAAATS TTNSFVVDLP YYTFSDSTLV PTSSTSSYNT PWNMLRYNLH 300 DQATMAKALG GVSSPSFAGG LTLPSSTVPG ISQQNYSLGH NGSFGTNYLT SSASASASAA 360 TAITGTGQAA AKNLGA*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGERGAKPEQ GGLFLPAGFR FHPRDDEIIT SYLLPKFLNP SFSPRAMGDV NLNQCEPRDL  60
PSKAKMGEKE WYFFCHKDMK YPTGMRTNRA TKEGYWKATG RDREIFEQAS AGGGGRELVG  120
MKKTLVFYRG RAPRGSKTNW VMHEFRLEGK SRHNADLHLR PKDEWVVCKV FNKDNEEDNK  180
KKAAAGEYSA GTPNVSSISA VDATSDEDDD PFINPTLHPM YFNSTSSLPD LTTIDDPWLG  240
PPYSAADYSI ASNAAAAATS TTNSFVVDLP YYTFSDSTLV PTSSTSSYNT PWNMLRYNLH  300
DQATMAKALG GVSSPSFAGG LTLPSSTVPG ISQQNYSLGH NGSFGTNYLT SSASASASAA  360
TAITGTGQAA AKNLGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	13	175	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	13	175	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	13	175	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	13	175	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	13	175	18	170	NAC domain-containing protein 19
3swm_B	2e-45	13	175	18	170	NAC domain-containing protein 19
3swm_C	2e-45	13	175	18	170	NAC domain-containing protein 19
3swm_D	2e-45	13	175	18	170	NAC domain-containing protein 19
3swp_A	2e-45	13	175	18	170	NAC domain-containing protein 19
3swp_B	2e-45	13	175	18	170	NAC domain-containing protein 19
3swp_C	2e-45	13	175	18	170	NAC domain-containing protein 19
3swp_D	2e-45	13	175	18	170	NAC domain-containing protein 19
4dul_A	1e-45	13	175	15	167	NAC domain-containing protein 19
4dul_B	1e-45	13	175	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250\|UniProtKB:Q7F2L3, ECO:0000269\|PubMed:18813954}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22096A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977422.1	1e-139	NAC domain-containing protein 77
Swissprot	Q5CD17	9e-92	NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBL	K3Y876	1e-138	K3Y876_SETIT; Uncharacterized protein
STRING	Pavir.J39049.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5120	30	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	7e-72	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22096A