PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_21713A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25664.6 Da PI: 10.1848 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.8 | 3.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gk+ye++s Oropetium_20150105_21713A 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKVYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 69.1 | 1.4e-23 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++++ +++ ++ + ++ L +ie L++++R++lGe+Le++s++eL +Le +Leksl iR kK+ell +qi +l++ke++l + Oropetium_20150105_21713A 79 NNKTVQKDIQQVKSDALSLATKIEALEKSKRKFLGESLEQCSIEELYSLEVKLEKSLHIIRGKKTELLEQQIAKLKEKERNLVN 162 4456778899************************************************************************** PP K-box 90 enkaLrkkl 98 +nk+Lr+k Oropetium_20150105_21713A 163 KNKELREKQ 171 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.104 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-31 | 3 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.88E-39 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 4.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.013 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVRRKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKVYEFASA 60 ASIQKTIDRY KTYTKEMVNN KTVQKDIQQV KSDALSLATK IEALEKSKRK FLGESLEQCS 120 IEELYSLEVK LEKSLHIIRG KKTELLEQQI AKLKEKERNL VNKNKELREK QHNLQAHLAV 180 PALKNCIQPP QLRDVPTPSN DNADVVTELY IGLPGSERPS NRDSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 4e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 4e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 4e-17 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 4e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 5e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 5e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 5e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 5e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_21713A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983814.1 | 1e-127 | MADS-box transcription factor 56 | ||||
Swissprot | A2Z9Q7 | 1e-104 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A368SNQ2 | 1e-125 | A0A368SNQ2_SETIT; Uncharacterized protein | ||||
STRING | Sb01g030570.1 | 1e-121 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-69 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_21713A |