PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21681A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 319aa    MW: 35712.7 Da    PI: 5.1147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21681AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-5291401129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtd+elv +yL+kkv+++k++l +vi++vd+y++ePw+L+   k+   e+++wyfFs +d+ky+tg+r+nrat +g
  Oropetium_20150105_21681A   9 VPPGFRFHPTDDELVGYYLRKKVASQKIDL-DVIHDVDLYRIEPWHLQDhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTG 91 
                                69****************************.9***************942443332556************************* PP

                        NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk+v +k ++ l+g++ktLvfy+grap+g+kt W+mheyrle
  Oropetium_20150105_21681A  92 FWKATGRDKAVRDKhGRGLIGMRKTLVFYTGRAPNGRKTGWIMHEYRLE 140
                                *************966678****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-583160IPR003441NAC domain
PROSITE profilePS5100558.1989160IPR003441NAC domain
PfamPF023652.8E-2810139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVTAMESCVP PGFRFHPTDD ELVGYYLRKK VASQKIDLDV IHDVDLYRIE PWHLQDHCKI  60
GYEEQSDWYF FSYKDRKYPT GTRTNRATLT GFWKATGRDK AVRDKHGRGL IGMRKTLVFY  120
TGRAPNGRKT GWIMHEYRLE TDENAIPQED GWVVCRAFKK RSVHPPRSVV GAWDVSYSCN  180
DPNITGAAAH FNQEPTQLDG AAASLLQYSS CRSELPQLES PPPSCQESHR DTADLDANTQ  240
DAAVSTDWRA LDRFIASQLS PDPDLPTEFS KPAGTQAGDN GDAPDTVELL FLDGEREDAD  300
LLGSVPSIST FLHDKEAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-47916220170NAC domain-containing protein 19
3swm_B3e-47916220170NAC domain-containing protein 19
3swm_C3e-47916220170NAC domain-containing protein 19
3swm_D3e-47916220170NAC domain-containing protein 19
3swp_A3e-47916220170NAC domain-containing protein 19
3swp_B3e-47916220170NAC domain-containing protein 19
3swp_C3e-47916220170NAC domain-containing protein 19
3swp_D3e-47916220170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21681A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750860.0KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661306.11e-160NAC domain-containing protein 105
RefseqXP_022678690.11e-160NAC domain-containing protein 105
RefseqXP_022678691.11e-160NAC domain-containing protein 105
SwissprotQ9SL411e-101NAC37_ARATH; NAC domain-containing protein 37
TrEMBLC5WUG91e-146C5WUG9_SORBI; Uncharacterized protein
STRINGSb01g030760.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.12e-98vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]