PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21506A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 263aa    MW: 29096.4 Da    PI: 10.4151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21506AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.17e-36151431128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppG++F+Ptdee+vv+yL+ +  +++l+  ++i++ d++++ PwdL     ++ +e yfF +r +k  tg+r nratk+g+Wk
  Oropetium_20150105_21506A  15 LPPGYKFKPTDEEIVVRYLRCRSVNQPLPS-DIIQDKDVLNHYPWDLV---PEGASEKYFFNHRVRKWGTGTRWNRATKDGFWK 94 
                                79***************************9.99**************4...457789*************************** PP

                        NAM  85 atgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                                a+g++ +++++  +        vglk+  vfy g+ p+g++t Wvm+eyrl
  Oropetium_20150105_21506A  95 ASGNEIPLFCTgvR--SrvpvmVGLKRKHVFYLGKLPSGQHTAWVMQEYRL 143
                                *********97442..355777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-388153IPR003441NAC domain
PROSITE profilePS5100540.51815211IPR003441NAC domain
PfamPF023652.0E-1916143IPR003441NAC domain
SuperFamilySSF1019416.15E-38199211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASFITLASG ASMPLPPGYK FKPTDEEIVV RYLRCRSVNQ PLPSDIIQDK DVLNHYPWDL  60
VPEGASEKYF FNHRVRKWGT GTRWNRATKD GFWKASGNEI PLFCTGVRSR VPVMVGLKRK  120
HVFYLGKLPS GQHTAWVMQE YRLTGAGLRP YRAVRPCTNN NSGQSSNNIV VVGKKQDNPA  180
DAIQGTPLEV KNNGILVKPD ESWVVCRIYK KRTRKPPVTI AVSNNTPPIT VSSATPPITI  240
SSSSSTSGAE KVCFFDFLGQ GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-281114311140Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21506A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3IE559e-77A0A2S3IE55_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-35NAC domain containing protein 83