PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21493A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 755aa MW: 81485.7 Da PI: 6.6608

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21493A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424.5	8.7e-130	381	753	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........s 74 lv+lLl+cA++vs+gd++ a + L l+ asp gd+mqR+a+yf+ ALaarl+ s+s+ + + ++++ + s Oropetium_20150105_21493A 381 LVHLLLACADFVSKGDQHSALRHLHLLRRVASPLGDSMQRVASYFADALAARLTLSSSNPSPSSSSTPRG--SgaaapypfppS 462 68*************************************************98444433333222222..134669999999 PP GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeel 158 e+l++++++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ + ++ Oropetium_20150105_21493A 463 PETLKIYQILYQACPYVKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAV 542 ***********************************************************************....88* PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 +etg+ L+++A++l+vpfef++ va+rle l++ +L+ + gEalaVn v +lhr++ ++l +L+++++ Pk++++v Oropetium_20150105_21493A 543 RETGRHLSSLAASLRVPFEFHAAVADRLERLRPAALQRRVGEALAVNTVNRLHRVP--GAHLG----PLLSMIRDQAPKIMTLV 620 *****************************************************9..44444....5************ PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 eqea hn++ Fl rfleal+yysa+fdsl+a++p++s r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e GF+p Oropetium_20150105_21493A 621 EQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRLMEGRGFEP 704 ******************************************************************************** PP GRAS 327 vplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 vpls a+ q + ll ++ +dgyr+ e++g+l+lgW+dr+++++SaWr Oropetium_20150105_21493A 705 VPLSPAAVGQSQVLLGLYGaGDGYRLTEDKGCLLLGWQDRAIIAASAWR 753 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.57	355	732	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-127	381	753	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MGILNSDTNS GMKLQQQQAP SSPIASVSES NIVVSSSDPD ANDALAGLQA LKFDADIDVE 60 IQSTDLAMWE SLFGPDQSSG TEFIMFSPRR EFMATGSPRR DFMVSSPKRD YMVSSPKRDY 120 MISSPKRDYM ISSPKREYMV TSPARREAVS SPRRSTFSNL YNSSMSSHGG NLQQGYLHGG 180 ISDGVQQQYG NLANNGKGKS MSPLHKVYIN NSYSNSGKNS GPSSLSCSSS SYSHGENLAL 240 PSMDPFLDDF KEGGYLGYSV PAKPCMANGG VGTAGTVTTV ATSSSQQFPT LSECLAMPEP 300 VYRDNAEAAV TMAASGGGLL LGGGGLQHDV FYEEQFGGEG LSLQHQMVKS DQWATDSSLH 360 SMLGSVIQAE AEQEQDSGLQ LVHLLLACAD FVSKGDQHSA LRHLHLLRRV ASPLGDSMQR 420 VASYFADALA ARLTLSSSNP SPSSSSTPRG SGAAAPYPFP PSPETLKIYQ ILYQACPYVK 480 FAHFTANQAI FEAFHGEDRV HVVDLDILQG YQWPAFLQAL AARPGGPPTL RLTGVGHPAA 540 AVRETGRHLS SLAASLRVPF EFHAAVADRL ERLRPAALQR RVGEALAVNT VNRLHRVPGA 600 HLGPLLSMIR DQAPKIMTLV EQEAGHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSAPR 660 MKVEQCLLAP EIRNVVACEG AERVARHERL DRWRRLMEGR GFEPVPLSPA AVGQSQVLLG 720 LYGAGDGYRL TEDKGCLLLG WQDRAIIAAS AWRC*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MGILNSDTNS GMKLQQQQAP SSPIASVSES NIVVSSSDPD ANDALAGLQA LKFDADIDVE  60
IQSTDLAMWE SLFGPDQSSG TEFIMFSPRR EFMATGSPRR DFMVSSPKRD YMVSSPKRDY  120
MISSPKRDYM ISSPKREYMV TSPARREAVS SPRRSTFSNL YNSSMSSHGG NLQQGYLHGG  180
ISDGVQQQYG NLANNGKGKS MSPLHKVYIN NSYSNSGKNS GPSSLSCSSS SYSHGENLAL  240
PSMDPFLDDF KEGGYLGYSV PAKPCMANGG VGTAGTVTTV ATSSSQQFPT LSECLAMPEP  300
VYRDNAEAAV TMAASGGGLL LGGGGLQHDV FYEEQFGGEG LSLQHQMVKS DQWATDSSLH  360
SMLGSVIQAE AEQEQDSGLQ LVHLLLACAD FVSKGDQHSA LRHLHLLRRV ASPLGDSMQR  420
VASYFADALA ARLTLSSSNP SPSSSSTPRG SGAAAPYPFP PSPETLKIYQ ILYQACPYVK  480
FAHFTANQAI FEAFHGEDRV HVVDLDILQG YQWPAFLQAL AARPGGPPTL RLTGVGHPAA  540
AVRETGRHLS SLAASLRVPF EFHAAVADRL ERLRPAALQR RVGEALAVNT VNRLHRVPGA  600
HLGPLLSMIR DQAPKIMTLV EQEAGHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSAPR  660
MKVEQCLLAP EIRNVVACEG AERVARHERL DRWRRLMEGR GFEPVPLSPA AVGQSQVLLG  720
LYGAGDGYRL TEDKGCLLLG WQDRAIIAAS AWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-85	388	752	26	378	Protein SCARECROW
5b3h_A	3e-85	388	752	25	377	Protein SCARECROW
5b3h_D	3e-85	388	752	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21493A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828284.1	0.0	DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A1E5VBF2	0.0	A0A1E5VBF2_9POAL; DELLA protein GAI1
STRING	Si027708m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9221	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-98	RGA-like 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21493A

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]