PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21234A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 333aa MW: 34735.8 Da PI: 7.754

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21234A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.8e-06	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F+++ L H+r+H Oropetium_20150105_21234A 5 TCKLCSRRFNSPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	12.8	0.00036	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H Oropetium_20150105_21234A 255 HECPYCYRVFPSGQALGGHKRSH 277 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0053	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.681	4	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.04E-6	5	26	No hit	No description
Pfam	PF13912	5.0E-5	6	26	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.04E-6	183	207	No hit	No description
SMART	SM00355	55	188	208	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.2E-9	188	212	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	255	277	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.995	255	278	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.4E-13	255	277	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	257	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAKNTCKLCS RRFNSPRALA GHMRSHSLAA AAAAAAAAAA AAAAAAAAKQ QISSGSSAST 60 SFTTADEDVG FKKLAAIHSP RENRKRSLRP SDGSFSDRES EVESTPPHAK RASPAATWGE 120 AEPVSSLSDA ATAEEDVALS LMKLSRDSWP SGTRFEVDYS DDGYAPPPPP NPPPRRAPAP 180 VAEKRTQFQC TACKKVFRSY QALGGHRASN VRGGRGGCCA PPWAPPPPPP QPPLPPSPLP 240 EQHGYEDMDA KQLQHECPYC YRVFPSGQAL GGHKRSHACG AAAAAAAQVD SAAVPPSPIK 300 NPAGMIDLNV EPPLEEVELS AVSEDPHFNP GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21234A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797881.1	1e-108	zinc finger protein ZAT1-like
TrEMBL	A0A2T8KX43	1e-107	A0A2T8KX43_9POAL; Uncharacterized protein
STRING	Si020018m	1e-105	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	3e-25	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21234A