PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20851A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 209aa    MW: 23330.2 Da    PI: 6.0744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20851AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.41.4e-3271311128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknra 77 
                                lppGf+F P+deelvv++L++k++  +++  +v++ v +++++Pw+L++       k+ +  ++wyfFs++         ++r+
  Oropetium_20150105_20851A   7 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DVVPMVLLNQHDPWELKAsnnpfkgKALQAGNKWYFFSHAT--------QSRV 81 
                                79*************************999.99**************8557888764445778******975........5799 PP

                        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                t +gyW+    d+ v s +g +vglkktLvf  g+ ++g++t+Wvmhey+l
  Oropetium_20150105_20851A  82 TPHGYWNPICADEMVSS-GGCNVGLKKTLVFSIGQPSEGSETNWVMHEYHL 131
                                ***************99.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-413172IPR003441NAC domain
PROSITE profilePS5100538.3937172IPR003441NAC domain
PfamPF023655.3E-228131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVGSSDLPPG FHFFPSDEEL VVHFLRRKAS LLPCQPDVVP MVLLNQHDPW ELKASNNPFK  60
GKALQAGNKW YFFSHATQSR VTPHGYWNPI CADEMVSSGG CNVGLKKTLV FSIGQPSEGS  120
ETNWVMHEYH LLDGSCKGSG SNTSSTSKRF QKKESQSKTE CNNWVICRVF YSSCGSQMSF  180
HEEGMELSCL DEVFLSLDDY DEVSFPNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-32717720173NAC domain-containing protein 19
3swm_B3e-32717720173NAC domain-containing protein 19
3swm_C3e-32717720173NAC domain-containing protein 19
3swm_D3e-32717720173NAC domain-containing protein 19
3swp_A3e-32717720173NAC domain-containing protein 19
3swp_B3e-32717720173NAC domain-containing protein 19
3swp_C3e-32717720173NAC domain-containing protein 19
3swp_D3e-32717720173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20851A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823281.11e-109NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK62e-56NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3L6PXI41e-109A0A3L6PXI4_PANMI; NAC transcription factor 29-like
STRINGSi011079m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-58xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]