PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20341A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 333aa MW: 35298.7 Da PI: 4.9781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20341A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.4e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W+t +r g++R++k+c++rw +yl Oropetium_20150105_20341A 14 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.5	1.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l Oropetium_20150105_20341A 67 RGKFSQDEEQTILHLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.146	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.43E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.06E-12	16	61	No hit	No description
PROSITE profile	PS51294	26.088	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-27	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.02E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGRSPCCDET GLKKGPWTPE EDEKLLQYIQ KNGHGSWRTL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQDEEQTILH LHSVLGNKWS AIATHLPGRT DNEIKNFWNT HLKKRLIQMG 120 FDPMTHRPRT DFFAALPQLI ALAALREQLG GDTPAAAQIQ LPGGAGASGV DVAIQAAKLQ 180 YLQCLLQSAA TTIASTTAAA PDQLDDAALG AAISSLQGIT LPGNTTVPPV STAAAGAQVS 240 CTTFEEPMSC SELANQQGLG YGGSEFDMLA ACQQQGGGSL PPLTDLCDVA NNPGDGCSAT 300 ASSSFGDGGT SCSPLSWPEF FSDDDPFITD FL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-31	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00180	DAP	Transfer from AT1G34670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20341A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728309	0.0	KJ728309.1 Zea mays clone pUT6589 MYB transcription factor (MYB63) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820029.1	1e-156	transcription factor MYB93-like
Swissprot	Q9S9Z2	7e-96	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A3L6PQU1	1e-155	A0A3L6PQU1_PANMI; Myb-related protein Hv33-like
STRING	Pavir.Fa00604.1.p	1e-155	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	4e-88	myb domain protein 92

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20341A

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]