PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20339A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 227aa MW: 24244.3 Da PI: 6.9124 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.7 | 7.9e-11 | 121 | 166 | 12 | 57 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +NRe+ArrsR RK+ ++ eL v L + N++L +el++ +a Oropetium_20150105_20339A 121 SNRESARRSRMRKQRQLSELWGQVSHLRGANRRLLDELNRALRSCA 166 8*************************************99777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.6E-5 | 114 | 174 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.87E-9 | 119 | 162 | No hit | No description |
CDD | cd14702 | 4.65E-15 | 121 | 166 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.4E-7 | 121 | 166 | No hit | No description |
Pfam | PF00170 | 6.6E-8 | 121 | 161 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MYHHFHGEVA SLSFLSPHPN PSFFAAHHHM NMALPPQAYF PPFDDPTSTF QEDADVTAAL 60 LAGGDVDSFE LDTVVREAAA HHVAGGNGSL SSGSGSDGGG YPLNAAAVSX XXXXXXXXXV 120 SNRESARRSR MRKQRQLSEL WGQVSHLRGA NRRLLDELNR ALRSCADARR ESARLKDEKA 180 ELANKLEQLM QAATAGVKKA TGAGASSSNH GCLSEPCNNT STTTSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 133 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | Transfer from AT3G30530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20339A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976632 | 9e-86 | EU976632.1 Zea mays clone 985663 bZIP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821559.1 | 4e-90 | bZIP transcription factor 2-like | ||||
TrEMBL | A0A3L6PRK2 | 8e-90 | A0A3L6PRK2_PANMI; G-box-binding factor 1 | ||||
STRING | Pavir.Fb01824.1.p | 5e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 3e-16 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20339A |