PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20289A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 685aa    MW: 74185.3 Da    PI: 6.2585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20289AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32281337259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d +++ei+Y+g+H h+
  Oropetium_20150105_20289A 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPDCPVKKKVERSQ-DDHITEIVYKGSHSHP 337
                                8****************************************.99*************7 PP
2WRKY104.26.9e-33499557159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+++d k v++tYeg+Hnhe
  Oropetium_20150105_20289A 499 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHAGCGVRKHVERASNDLKSVITTYEGKHNHE 557
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29272339IPR003657WRKY domain
SuperFamilySSF1182902.48E-26277339IPR003657WRKY domain
SMARTSM007745.0E-36280338IPR003657WRKY domain
PROSITE profilePS5081123.032281339IPR003657WRKY domain
PfamPF031064.5E-25281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-37484559IPR003657WRKY domain
SuperFamilySSF1182908.11E-29491559IPR003657WRKY domain
PROSITE profilePS5081137.505494559IPR003657WRKY domain
SMARTSM007741.3E-37499558IPR003657WRKY domain
PfamPF031061.3E-25500557IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAGTNNCGAL MEDWAVPSPS PRTLMSSFWS EEFSSGPFSH IISDNSSSKP QDGINKNKIS  60
FDSSEEDAMQ ETKASLQLES NLFDSNEKLT SHGGLAERMA VRAGFGVLKI DTSRVSSSAP  120
VRSPVTIPPG VSPRELLESP VFLPKDIAQP SPTTGKLPFL IPHDCKSTIL SVHNKDEDCL  180
HDNTAFSFQP ILRSKPPNFS AAEKGASVVC QNQSSANDNQ ESSLQSKPIE TKYVTDTALA  240
QPTACDSMLD NDQPSLADEQ EESEENQNGE YSSTLITTPA EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPD CPVKKKVERS QDDHITEIVY KGSHSHPLPP PNRRPSVPLS QFNDLQADGQ  360
ENFGSEPGHI VAASRGSTPN GCVHEVHSGV LETKLSGSLI TTEIADTSVT ESREAMDVSS  420
IISSSDKDDK ATLSSIPLTF DGDDDETESK RRLNPNTKKM DASATTNTMT STLDMATMAS  480
RAVREPRIIV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTHAGC GVRKHVERAS  540
NDLKSVITTY EGKHNHEVPA ARNSSRHPSS SAAQQASNLQ QRLQTEQDSI AQFSNVASNG  600
SFCLPQLSAA SGGFCFGMLP PGMAVPAVPV HIPGHPPAMH HYPGLILSRG GSGMKVNPAV  660
TRSGSETNQQ LMGRLPQGPH ISIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37281560878Probable WRKY transcription factor 4
2lex_A4e-37281560878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20289A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A2T7D8Y40.0A0A2T7D8Y4_9POAL; Uncharacterized protein
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-67WRKY DNA-binding protein 3