PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19527A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 393aa    MW: 41384.4 Da    PI: 5.3088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19527AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.2e-26201259259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Oropetium_20150105_19527A 201 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 259
                                699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.49E-24200261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-26200261IPR003657WRKY domain
SMARTSM007743.2E-31200260IPR003657WRKY domain
PROSITE profilePS5081129.126201261IPR003657WRKY domain
PfamPF031062.6E-22202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MRRPLLLVTM EPFNDWDLQA VVRSCSSFAH HADEEPAGAD GAAAALHEAA AQEPVAPAPA  60
PPPPPDVAVQ ERRRAQPRVA PVVTTGRASS TAAEAAPSNE QQEKAASRTT VYGLEYLDLV  120
DRKPFLLPPS TNXXXXXXXX XXXVMISFPA ASTSGVQSRG PPGRKAAGPR TPRPKRSSKK  180
SQLKKVVREM PVADGVGVSS SDPWAWRKYG QKPIKGSPYP RGYYKCSSMK GCMARKLVER  240
SPAKPGVLIV TYMAEHCHPV PTQLNALAGT TRHTAKSSSS AAAAAGEDDS KPAASSPKSH  300
HEQGDEAAAR CDAADDSNEA STAPAPQPPV AAAECGGGTG GAEEAAALAD DESDFWPAEM  360
DMDELLAPAD DDFDFEAVLD EDDGVLGRRL SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-17180262280Disease resistance protein RRS1
5w3x_D7e-17180262280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19527A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769246e-85AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458190.11e-110probable WRKY transcription factor 27
TrEMBLA0A1E5UWP31e-109A0A1E5UWP3_9POAL; WRKY transcription factor 22
TrEMBLC5XEC41e-108C5XEC4_SORBI; Uncharacterized protein
STRINGSb03g028440.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-35WRKY family protein