PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19460A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LSD
Protein Properties Length: 666aa    MW: 70318.8 Da    PI: 4.0186
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19460AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1231.3e-07574598125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                Cg Cr l++YPrGA++V+C  C t+
  Oropetium_20150105_19460A 574 CGCCRELIAYPRGATHVQCFGCLTI 598
                                9******************988875 PP
2zf-LSD144.91.9e-14612636125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                Cg+C tlL+YP+GAp+VRC++C +V
  Oropetium_20150105_19460A 612 CGQCETLLMYPFGAPAVRCSNCLFV 636
                                **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-10571601IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-7574598IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:2.20.25.1005.7E-4589638IPR023407Ribosomal protein S27e, zinc-binding domain
TIGRFAMsTIGR010534.4E-8610637IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-11612636IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MPPALESGAE GELLQQQLPS PRSEIVPPLC QNSEPAELTR LPLQAENASL EAAANEVAAV  60
ASEDACGSPP ALDAMDGEAA PESQSEGPLQ EPMHTSTSPK MESEVCSTDM APPGFKNCKS  120
KWLPQPVHTM PFESTHYLVE ASVTDTAGVM PEAAVGSLPA LGTMDMEMGV SAGQLPSSKS  180
EENSSLHQSV MVPSSLTIEA APCSPDTAPP GFENFKTSWL PQPTVPPSAE TTCFLDVATT  240
KEELVEKSCS VPTLDTMDME TDTALESGAG GLLEVPGPGS SSPRMQPAPC SPYIAPPGFE  300
SLTLPQLQLP SPVSQTSHIS QDSPATAVVC LTSEDAPQPS PVLKAMDVEM DAAPALPSSE  360
TGAQESLQQD PSLLASQNLK IVLSEFQNLE SLEDAVNTTV TVDLGHPLSV AEATEEAKDH  420
ILPPQLENGC DEPSPCQEPN ASSTVAQAAP SLPGSFESLE SSQQTSPRLA ERIDSPSHVP  480
FTKSVTVKSE KMELLSPFQA TDTDLESAPV LQSPLKSEEK SLRHPPHQPS SPLGQDAPCA  540
PDIAAPGYEN FESSAKLPPP PPLCPNFEMG QMVCGCCREL IAYPRGATHV QCFGCLTINL  600
VLEAHQVGKV YCGQCETLLM YPFGAPAVRC SNCLFVTEIG QERHVRPRMS EEQETPPHSQ  660
ELDPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19460A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969153.11e-177proteoglycan 4
TrEMBLA0A0A9RWR30.0A0A0A9RWR3_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-30lsd one like 2