PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19457A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CPP | ||||||||
Protein Properties | Length: 150aa MW: 16239.6 Da PI: 7.3729 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 23.7 | 9.4e-08 | 13 | 48 | 5 | 40 |
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +CnCk s C ++ C+Cf + +Cs+ CkCe C+N+e Oropetium_20150105_19457A 13 SCNCKTSLCCQLQCSCFRKLWHCSDACKCECCRNTE 48 7*********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 11.042 | 1 | 49 | IPR005172 | CRC domain |
SMART | SM01114 | 0.001 | 9 | 50 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-5 | 13 | 48 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MVAMDMDVDP RPSCNCKTSL CCQLQCSCFR KLWHCSDACK CECCRNTEAY EAFVEECAEI 60 ILKKTPRAFQ RKGGCGCLKV ACSKTSAAAS RQGNPPPAPA PVSSPEPGGV LGEMPVPRVC 120 QHARSKESNS DPSAFYKSFL DEECFSQNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19457A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6SGH0 | 8e-12 | A0A3L6SGH0_PANMI; Protein tesmin/TSO1-like CXC 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 1e-06 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19457A |