PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19271A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 291aa    MW: 30304.8 Da    PI: 7.0193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19271AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09205246955
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 + RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Oropetium_20150105_19271A 205 AKTRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 246
                                589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-12198250No hitNo description
Gene3DG3DSA:4.10.280.106.7E-12198253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13200256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6206246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALVREHTAV YGGCFDSAEA SVFDALLGGD LFGGYGSPEP AAYNNVWSGG SGAAASVLAF  60
DRAAISGEEE EESDAWIEAA MDDHQSCYGG AAAAPPQRPS VGFDATTGCF TLMTERAASS  120
SAGAGRQPFG LLFPSTSSGS GGSPADRAAA HPAARTSQKR AYVQGVEPQA ACPKKKQCGA  180
GRKTSNKANK SAPAVPTKDP QSLAAKTRRE RISERLRTLQ ELVPNGTKVD LVTMLEKAIS  240
YVKFLQLQVK VLATDEFWPA QGGKAPEISQ VREALDAILS SSSHKGHQLN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19271A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096628e-99AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454405.11e-100transcription factor bHLH83
TrEMBLA0A2T7FB561e-102A0A2T7FB56_9POAL; Uncharacterized protein
STRINGSb04g030230.11e-99(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-51ROOT HAIR DEFECTIVE6