PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19093A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 380aa    MW: 40309.6 Da    PI: 8.8218
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19093AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30177235259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh 
  Oropetium_20150105_19093A 177 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 235
                                79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-30166237IPR003657WRKY domain
PROSITE profilePS5081132.833171237IPR003657WRKY domain
SuperFamilySSF1182901.29E-25175237IPR003657WRKY domain
SMARTSM007747.8E-36176236IPR003657WRKY domain
PfamPF031063.5E-25178234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEEEHCFNNW DLEAVVRLAC RRRLSPPRPS QVNDPFSSFP PAPPLQLQGP PAAASELAND  60
RQEADAGWRF PDLRPGGGQG GDELLRALLA VQPTMPPPPL PTLPHPPHQP PQQQQQPVVV  120
APAEVPAHQA RGTAPASAPT RAQPSGRQMP GAVPRSKRRK NQVKKVVCHV PADGSSSDVW  180
AWRKYGQKPI KGSPYPRGYY RCSSSKGCAA RKQVERCRTD PNTFILTYTG EHNHAAPTHR  240
NSLAGTTRHK FPSTAAASPP PPSIVVGGSG SSESQSQQHQ QQPSPPSTSA GLSPTTPLRT  300
PSMXXXXXXX XXXXXXXXXX XAGEDELLFL NGDADSATAA PLEPMSSLFD VVDEPFLGSP  360
WATASTGSPA AAGAAGAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19160238280Disease resistance protein RRS1
5w3x_D2e-19160238280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19093A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613700.0BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587190.0HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151984.11e-134WRKY39v2 - superfamily of TFs having WRKY and zinc finger domains
TrEMBLB6U7881e-133B6U788_MAIZE; WRKY39v2-superfamily of TFs having WRKY and zinc finger domains
STRINGSi017529m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-49WRKY family protein