PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18708A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 557aa    MW: 59406.8 Da    PI: 6.66
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18708AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.29.1e-20124185359
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT...EEEEEEES--SS- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk...vveitYegeHnhe 59 
                                Dg+ WrKYGqK+++g ++pr YYrC+++  gC+++++v+r++e+++     e+ Y g+H+++
  Oropetium_20150105_18708A 124 DGFIWRKYGQKDINGRRHPRLYYRCAYShqGCTATRRVQRTHEEGEpaaEYEVAYYGKHTCR 185
                                9************************88777************9987222479*******995 PP
2WRKY61.12e-19377437359
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT..EEEEEEES--SS- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk..vveitYegeHnhe 59 
                                Dg+ WrKYG+Ke+ g ++pr YYrC+++  gC+++++v+r++ed++  + ei Y geH+++
  Oropetium_20150105_18708A 377 DGCIWRKYGRKEISGCKHPRLYYRCAYRrqGCTATRRVQRAHEDGEpaAYEIAYYGEHTCR 437
                                9**************************999************98653389********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.05E-19118185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-21118185IPR003657WRKY domain
SMARTSM007741.2E-22122186IPR003657WRKY domain
PfamPF031061.1E-21124185IPR003657WRKY domain
PROSITE profilePS5081116.834124167IPR003657WRKY domain
SuperFamilySSF1182904.05E-19369437IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-21369437IPR003657WRKY domain
PROSITE profilePS5081116.203370420IPR003657WRKY domain
SMARTSM007744.7E-25375438IPR003657WRKY domain
PfamPF031061.7E-21377437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MALAVPDAVV LELMTMGQQS AAHLGDLFRS VSPSSPYQEL AAEILGCCNR VIAALTTANN  60
GASGDKRKRK QAVDHEAAAA AAACSPPRKR GSGADNNKLL PVEFRRARGG AEALGVVTSS  120
TTLDGFIWRK YGQKDINGRR HPRLYYRCAY SHQGCTATRR VQRTHEEGEP AAEYEVAYYG  180
KHTCRGAATS HGAAAAVPPT VVDFGSNNNN NAWASSAASS ESEPQVWSWG GQTSQGGWSS  240
SASSEVMGFE FAQTADEWHD TARAEEVPSA TPFDPVMEFL DGCFDWESVV NSTAYLGALL  300
PTSSSPAASP QQGLVAEIRR CCDRVIATLR AGGGNKRKAV QYEGAAAASL PPPPPPKKRS  360
RGGEEALRVV TSDTTVDGCI WRKYGRKEIS GCKHPRLYYR CAYRRQGCTA TRRVQRAHED  420
GEPAAYEIAY YGEHTCRGAV AACQGRPPPA VVDYGSNAWA GVGAVATPAA SERQPLSCDA  480
EVVSSSQGGW SSEAGFEAQT THQWHDAARV EVGEPGATPC YAADPVTEFL DGCFDWASVI  540
NQPFDVGDLH HLATLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-15117437369OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18708A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817680.12e-86probable WRKY transcription factor 66
TrEMBLA0A2S3HQI14e-85A0A2S3HQI1_9POAL; Uncharacterized protein
TrEMBLA0A3L6R3U84e-85A0A3L6R3U8_PANMI; Putative WRKY transcription factor 38
STRINGSb03g038210.12e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-18WRKY DNA-binding protein 46