PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18706A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 318aa    MW: 34054.1 Da    PI: 5.6176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18706AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.71.7e-21122183259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK++++++fpr YYrC+++   gCp++++v+ rs+ dp   +++Y +eH+++
  Oropetium_20150105_18706A 122 SDGYQWRKYGQKKITNTRFPRCYYRCSYHrdrGCPATRQVQqRSQGDPPQYVVVYVNEHTCD 183
                                7***************************99999*******737888**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23107184IPR003657WRKY domain
SuperFamilySSF1182904.58E-22115184IPR003657WRKY domain
PROSITE profilePS5081118.934116185IPR003657WRKY domain
SMARTSM007741.2E-31121184IPR003657WRKY domain
PfamPF031061.3E-23123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQAHSRFSVS GGSCSSSAVS ADEHEAVIRA LTRGHELTAQ LQAEAMLALR GQGQAEGTAA  60
FILQEVSRAF TVCLSIMSXX XXXXXXXXXX XXAEVPAELA GRRPARDENV PRREIVTYNP  120
YSDGYQWRKY GQKKITNTRF PRCYYRCSYH RDRGCPATRQ VQQRSQGDPP QYVVVYVNEH  180
TCDTTAWEAE ASVPAAATGT SVSSTATATN LPAGLLGGRG VQEERERQAL VSSLACVLGA  240
HSPAGXXXXX XXXXFRSQEP QPASVVVDPS GGGSGGGGVP PRVHVDAELD VMDYDVAGAL  300
FFGDSNGLPA DDDGLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-161231821068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18706A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638612e-65BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564872e-65EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699482e-65JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.11e-92probable WRKY transcription factor 64
TrEMBLC5XNA23e-91C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.16e-92(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-18WRKY DNA-binding protein 70