PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18705A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 339aa    MW: 36296.5 Da    PI: 4.8157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18705AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.72e-07122142222
                                --SS-EEEEEEE--TT-SS-E CS
                       WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                +Dgy+W KYGqK++++  f r
  Oropetium_20150105_18705A 122 KDGYQWHKYGQKNIQNCSFMR 142
                                8**************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-7114142IPR003657WRKY domain
SuperFamilySSF1182908.37E-10117164IPR003657WRKY domain
SMARTSM007748.6E-8121165IPR003657WRKY domain
PfamPF031062.9E-5122142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAFDRVANKL SDILAGGYHL TAKLLALLGH PLDSQGQEEA MACSQELSRV FAVSMSMLNK  60
QPDYSNWTLK VAPEIRSGDS FSVCTLAPNK EKLVSRRQGV TSHRNVRGEE FERKEVTPSP  120
HKDGYQWHKY GQKNIQNCSF MRLKLDDGDA PMYEVTYVND HTCRVVVPHD DANNNNNNSS  180
PPPPXXXXXX XXXXXVAENT TGRNSGGGAA PFDGLLHHRI IGGGAEENEA IVSCLATVIS  240
GGTAPSSPAG AGPPTSGSDP QQLLLAAGRR TSSGDDDGSV ADGGVAMTML TTGTGFSWDP  300
SSSSLFWPAE AAADLCDDGQ MDMDVARFVD TVWPQYNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18705A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.16e-08WRKY DNA-binding protein 64