PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18539A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 137aa MW: 15048.9 Da PI: 10.8457 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.2 | 1.1e-15 | 55 | 116 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke kr +r+ +NR++A+ R+RKka++ Le kvk Le++N+++ ++l++l++e + l++ Oropetium_20150105_18539A 55 DKEHKRLKRLLRNRVSAQQARERKKAYLTDLEVKVKDLEKKNSEMEEKLSTLQNENQMLRQI 116 5899*****************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-14 | 55 | 119 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-14 | 56 | 117 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.3 | 57 | 120 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.5E-13 | 59 | 117 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-16 | 59 | 119 | No hit | No description |
CDD | cd14704 | 2.77E-16 | 60 | 111 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 62 | 77 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MESDEEIRRV PELGLELPGG PSTSGRDAGG GAERTQASAV AAQASGRRRV RSPADKEHKR 60 LKRLLRNRVS AQQARERKKA YLTDLEVKVK DLEKKNSEME EKLSTLQNEN QMLRQILKNT 120 TVSRRGPGSA ANGEGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2oqq_A | 5e-15 | 80 | 119 | 3 | 42 | Transcription factor HY5 |
2oqq_B | 5e-15 | 80 | 119 | 3 | 42 | Transcription factor HY5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18539A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063353 | 5e-80 | BT063353.1 Zea mays full-length cDNA clone ZM_BFc0055M22 mRNA, complete cds. | |||
GenBank | EU975706 | 5e-80 | EU975706.1 Zea mays clone 497680 transcription factor HY5 mRNA, complete cds. | |||
GenBank | KJ726945 | 5e-80 | KJ726945.1 Zea mays clone pUT3491 bZIP transcription factor (bZIP61) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796807.1 | 2e-79 | transcription factor HY5-like | ||||
Swissprot | Q9SM50 | 3e-50 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | A0A2S3GME7 | 5e-78 | A0A2S3GME7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QJF1 | 4e-78 | A0A3L6QJF1_PANMI; Transcription factor HY5-like | ||||
STRING | Pavir.Aa02966.1.p | 4e-78 | (Panicum virgatum) | ||||
STRING | Si018524m | 4e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 3e-52 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18539A |
Publications ? help Back to Top | |||
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