PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18346A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 313aa    MW: 32828.5 Da    PI: 5.19
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18346AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16139190458
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l   +   ++
  Oropetium_20150105_18346A 139 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLTDAN---QQ 190
                                79**************************************9996555444...43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17136200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185138190IPR004827Basic-leucine zipper domain
PfamPF001704.7E-14139188IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-13139191No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13140191No hitNo description
CDDcd147023.27E-23141191No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKKCPSELEL EAFIGGVEGA AAAAGEQKPG HVAPFGAGVM FPAGGGDLSA FSFADSNTLN  60
GSIPNHLWSH NHGARHPAIS TTIESQSSIC AAASPTSATN LNVKESQTLG GTSGSDSDSD  120
SFLDIEGGPC EQSTNPLDVK RMRRMVSNRE SARRSRKRKQ AHLADLETQV DQLRGENASL  180
FKQLTDANQQ FTTAVTDNRI LKSDVEALRV KVKLAEDMVA RGAMSCGLGL SPVLNPRQAC  240
RGPDVLSGLD FPGDDACFMG LSPPTEQVQN SPLQSIASLE SLENRMASEV TSCGAGGDVW  300
GWESHSNGGL SK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRSRKRK
2152159RRSRKRKQ
3154159SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18346A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.10.0basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-141RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ40.0A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-43basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]