PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18199A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CPP | ||||||||
Protein Properties | Length: 75aa MW: 8337.75 Da PI: 8.664 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.6 | 7.7e-16 | 31 | 66 | 4 | 39 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+Cf+ ++ Cs +CkCedCkN Oropetium_20150105_18199A 31 RKCTCKKSACLKKYCDCFQGKAGCSINCKCEDCKNP 66 69*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 15.447 | 1 | 68 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-12 | 28 | 69 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.8E-12 | 31 | 65 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MHDALHIEEA IRASGPVRHD LPERSLIDIY RKCTCKKSAC LKKYCDCFQG KAGCSINCKC 60 EDCKNPFGRK GKAF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18199A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963115.1 | 2e-19 | protein tesmin/TSO1-like CXC 7 | ||||
Swissprot | Q9LUI3 | 2e-14 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A3L6T465 | 4e-20 | A0A3L6T465_PANMI; Protein tesmin/TSO1-like CXC 7 | ||||
STRING | OBART12G18260.1 | 4e-20 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9610 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 8e-17 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18199A |
Publications ? help Back to Top | |||
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