PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18171A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 362aa    MW: 38841 Da    PI: 10.8359
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18171AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31293351259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  Oropetium_20150105_18171A 293 TDEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEPTMLIVTYEGEHNHT 351
                                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16244290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33280351IPR003657WRKY domain
PROSITE profilePS5081129.746287350IPR003657WRKY domain
SuperFamilySSF1182901.22E-26290351IPR003657WRKY domain
SMARTSM007743.3E-37292352IPR003657WRKY domain
PfamPF031061.5E-26294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEVEVASRA AVESCNRVLA LLSQQQDPAL LRSIASETGE ACAKFRKVVA LLGDTSGGSG  60
HARGRFSRRG RFLNQKGFSG SSSSGAGAPP LETTMTGSAA AAPSTSYAHV QQFRARINGA  120
AAAESRGMLD LPSSSSKSHP FGAPKLVQPL SVQFQIGNVA HRYPFPQQQQ QQPSRQKLRQ  180
AAEMFKRSSS GISLKFESPS ATMSSARSFV SSLSSMDGSV VSLEGKRPFH LVGAPPVASD  240
PAPKRRCTGK GEDGRGKCAA TGRCHCSKRS RKLRNKRSIK VPAISNKIAD IPTDEYSWRK  300
YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDEPTML IVTYEGEHNH TRLPSAQSAQ  360
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19285354775WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18171A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-55WRKY DNA-binding protein 39