PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18139A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 490aa    MW: 56119.9 Da    PI: 8.0336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18139AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1930119298
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fk +     +++g ++lp kf+++++ + +e +++ l+++ g++W+v l  +k+++  +l +GW eFvka++L+e+D ++F+ +
  Oropetium_20150105_18139A  30 FKLM--TGDFAKG-ISLPEKFTKKFKRQIAEAFDVDLKTPGGETWRVGL--DKNGDDLFLMSGWGEFVKAHDLQENDLIIFTCS 108
                                5555..4445555.9**********999999******************..*******************************77 PP

                                SSSEE..EEEEE- CS
                         B3  86 grsefelvvkvfr 98 
                                g+ +f   v +f+
  Oropetium_20150105_18139A 109 GKLSF--EVLIFE 119
                                75555..777776 PP
2B353.44.7e-17248337199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffk +     ++++ +++p +f ++ +gk   sk  +l+ +s+++W+v +  +k+ ++ ++t+GW +F++a+gL+e+D ++F+l
  Oropetium_20150105_18139A 248 FFKLM--TGDFAQC-ISIPQRFEKTLKGK--ISKRFSLKAPSSETWSVSV--SKHANELFFTSGWGDFARAHGLQENDLLIFTL 324
                                56666..5566677.9******8888877..7889***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g+ +f   v++f++
  Oropetium_20150105_18139A 325 NGKYSF--DVMIFDT 337
                                998777..8999886 PP
3B343.65.2e-143924801099
                                HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                         B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                                 +k+++l++   fa +h ++   ++ +l l+  + ++W vk+ y ++  r +  + W +Fv++n+L   D++vF+l++  ++++
  Oropetium_20150105_18139A 392 GHKNNILTIHSGFAVDHlEMR--SHDMLLLRPNRKEKWYVKY-YHGNATRGFNCRRWVKFVSDNRLHMDDVCVFELNKGaKRKT 472
                                568899***********5433..555777788999*******.5555555445569*********************888**** PP

                                .EEEEE-S CS
                         B3  92 lvvkvfrk 99 
                                +vv+v+rk
  Oropetium_20150105_18139A 473 MVVHVVRK 480
                                *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2022123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59226121IPR003340B3 DNA binding domain
CDDcd100171.28E-1628118No hitNo description
Gene3DG3DSA:2.40.330.101.6E-1928123IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-1629121IPR003340B3 DNA binding domain
PfamPF023627.5E-1729120IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-21241340IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.69245338IPR003340B3 DNA binding domain
CDDcd100171.61E-17247336No hitNo description
Gene3DG3DSA:2.40.330.103.3E-20247340IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-10248338IPR003340B3 DNA binding domain
PfamPF023623.7E-14248336IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16374479IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-15375479IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-11380479No hitNo description
SMARTSM010192.4E-7382481IPR003340B3 DNA binding domain
PROSITE profilePS5086310.038383481IPR003340B3 DNA binding domain
PfamPF023621.0E-11393480IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAIEKGCASC REWQEHCYWE HMDVSKIRFF KLMTGDFAKG ISLPEKFTKK FKRQIAEAFD  60
VDLKTPGGET WRVGLDKNGD DLFLMSGWGE FVKAHDLQEN DLIIFTCSGK LSFEVLIFEA  120
NGCEKVSSLF GNRTGPNMHK NVVAPQGKHS EHYSLGDSEK TTTPSQLLGY PDNASASKEF  180
SEGTEPYHTL YECTAQTAYD IVQVIPRQFV ADHLKERTHE MAQKGCEGCQ KWQEHYSQEH  240
MDVTRIRFFK LMTGDFAQCI SIPQRFEKTL KGKISKRFSL KAPSSETWSV SVSKHANELF  300
FTSGWGDFAR AHGLQENDLL IFTLNGKYSF DVMIFDTSGC EKVSSFFIGT KDRCMRKHFN  360
NIVDEREEIL SLASIQPGNP AFVTILHKTH IGHKNNILTI HSGFAVDHLE MRSHDMLLLR  420
PNRKEKWYVK YYHGNATRGF NCRRWVKFVS DNRLHMDDVC VFELNKGAKR KTMVVHVVRK  480
VNGSDSEMH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18139A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT22e-63Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-21B3 family protein