PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18137A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 21108 Da PI: 6.8721 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 34 | 101 | 18 | 87 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++k++a ++ ++ ++++tl+l d ++++W ++l ++k+ gry l++GW +F ++++L+egD+++F+ ++ Oropetium_20150105_18137A 34 MSKDYALKYLLEANGTITLSLPD-NSKTWAINLDINKH-GRYALSSGWLNFIHDKRLREGDICTFQPSKG 101 56788888877777877777777.77*******65555.58*************************6543 PP | |||||||
2 | B3 | 44.3 | 3.2e-14 | 130 | 185 | 45 | 98 |
EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS B3 45 sWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 +We + + +++++ l++GW +Fv +n Lk+gD+++F+l+++ se ++ v+++r Oropetium_20150105_18137A 130 TWESGHEASACQQGHRLGRGWGQFVADNSLKVGDICLFELMKDmsSELTMSVHIIR 185 8*****88999999*************************99884555666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-4 | 3 | 33 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-7 | 17 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.914 | 17 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.00E-14 | 22 | 111 | No hit | No description |
SuperFamily | SSF101936 | 1.29E-13 | 32 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-14 | 34 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.5E-11 | 34 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.01 | 130 | 187 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-13 | 130 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.6E-12 | 130 | 186 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.06E-10 | 130 | 185 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-12 | 131 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
YVKIAKEEND LVFGSGWETF SSAHDLAYGD FLAMSKDYAL KYLLEANGTI TLSLPDNSKT 60 WAINLDINKH GRYALSSGWL NFIHDKRLRE GDICTFQPSK GNNNMALIFH PLEATSKTLW 120 FGLCKSISPT WESGHEASAC QQGHRLGRGW GQFVADNSLK VGDICLFELM KDMSSELTMS 180 VHIIRKGAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18137A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9Y109 | 8e-37 | A0A0D9Y109_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G14620.1 | 1e-37 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18137A |