PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18128A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 523aa    MW: 55636.9 Da    PI: 5.183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18128AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-104394791055
                                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Oropetium_20150105_18128A 439 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 479
                                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.20201.4E-7856211IPR029057Phosphoribosyltransferase-like
HamapMF_0000433.64558228IPR005764Adenine phosphoribosyl transferase
TIGRFAMsTIGR010909.3E-6059210IPR005764Adenine phosphoribosyl transferase
SuperFamilySSF532712.36E-4960219IPR029057Phosphoribosyltransferase-like
PfamPF001563.3E-1786206IPR000836Phosphoribosyltransferase domain
CDDcd062233.84E-2892217IPR000836Phosphoribosyltransferase domain
PROSITE profilePS5088815.021429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-13429486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-11434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.40E-12438483No hitNo description
PfamPF000108.1E-8439479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006168Biological Processadenine salvage
GO:0009116Biological Processnucleoside metabolic process
GO:0005829Cellular Componentcytosol
GO:0003999Molecular Functionadenine phosphoribosyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MPWLLGCSLP VRRPTSAPAT PAALPSAAAG SSVRIGQLRR LRRRVTLMAS GDARVAQIAS  60
SIRVIPDFPK PGIMFQDITT LLLDPKAFRD TIDLFVERYK DKGITVVAGV EARGFIFGPP  120
IALAIGAKFV PLRKPKKLPG PVISEEYSLE YGTDKIEMHV GAVESNDQAL VVDDLIATGG  180
TLCAAVNLLE RVGAKVVECA CVIELPELKA GGLIAEVGWT EFDFLLQGEE SEMMAQLLGT  240
FPSNGEGGQQ ELPWADQASS ACCDSTSSSL AVPSAYEGYY LSNSNEALGN SSDIVSDDLG  300
LLQDQGAAEF LNVFANHSLA FYGNGSLLHQ EDLDDSGMSI LDSASAINKM KHLAEEVDDQ  360
TRGRKRGRKG SETKGLKRTK QSRDEDADIP VTSGSPTSCC TSDSDSNASQ ESADAEARPK  420
AKARAGRGAA TEPQSIYARK RRERINERLK ILQNLVPNGT KVDISTMLEE AVHYVKFLQL  480
QIKGTACDVG SHESGQGELQ KLGRGANGVS LSVAAAAATS RP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dy0_A7e-56482258185Adenine phosphoribosyltransferase
2dy0_B7e-56482258185Adenine phosphoribosyltransferase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18128A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616592e-39AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806266.11e-134transcription factor bHLH139-like isoform X1
RefseqXP_025806267.11e-134transcription factor bHLH139-like isoform X1
TrEMBLA0A3L6T0I01e-133A0A3L6T0I0_PANMI; Uncharacterized protein
STRINGPavir.Ca02532.1.p1e-135(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-27ROOT HAIR DEFECTIVE 6-LIKE 2