PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17988A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 24918.1 Da PI: 5.4487 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.4 | 4.3e-14 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA EL +LCda++a+i+fs tg+lye+ss Oropetium_20150105_17988A 1 MKKARELGILCDADIALIVFSCTGRLYEFSS 31 8****************************96 PP | |||||||
2 | K-box | 69.3 | 1.2e-23 | 55 | 144 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + ++a+ +q+e++ L+++++nLq ++R+llGe+L++L++++Lq L++q+e sl+ iR+kK++ll ++i + ++ +lq+en Oropetium_20150105_17988A 55 NPITEAKFWQREVTTLRQQVQNLQLNNRRLLGEELSDLTVRDLQFLQSQVEMSLQYIRKKKEQLLADEIIQISQQGLALQKENI 138 5567899***************************************************************************** PP K-box 93 aLrkkl 98 +L+k++ Oropetium_20150105_17988A 139 ELTKEV 144 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.432 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-4 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-16 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-12 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-21 | 58 | 144 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.731 | 60 | 150 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MKKARELGIL CDADIALIVF SCTGRLYEFS STSMKSTIER YQEAREETNN SRLLNPITEA 60 KFWQREVTTL RQQVQNLQLN NRRLLGEELS DLTVRDLQFL QSQVEMSLQY IRKKKEQLLA 120 DEIIQISQQG LALQKENIEL TKEVTNAHQQ KMELQKKLAG QSTSGGDREQ ASGGSSDDKS 180 HEQPTGVRIG DESAAVATEL GHFTALRELT AMWEWRMGGG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17988A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817983.1 | 1e-83 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 4e-78 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A2S3HW57 | 2e-81 | A0A2S3HW57_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07457.1.p | 3e-90 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-46 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17988A |
Publications ? help Back to Top | |||
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