PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17907A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 270aa    MW: 29939.5 Da    PI: 8.0144
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17907AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.3e-11179220546
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                                kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL 
  Oropetium_20150105_17907A 179 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALS 220
                                8999********************************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-14175239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76177233IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-11179233No hitNo description
PfamPF001704.3E-10179229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-14179233No hitNo description
CDDcd147033.54E-23180230No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAQLPPKVPT MAMAPAWPEF GGGHHHHHHH HQRSPSVGAF LAAPMPPLPP QPQQPHHAQQ  60
QQQPSWVDEF LDFSAAKRVA HRRTVSDSVA FLDDNAAVGP HEXXXXXXXX XXSMFADDLA  120
PPPQPTQAAP AQSSSSPSDH NSFNNDEKQE KGETTEEAQS EXXXXXXXXX XTPAPVDPKR  180
VKRILANRQS AQRSRVRKLQ YISELERSVT SLQTEVSALS PRVAFLDHQR SLLTLGNSHL  240
KQRIAALAQD KIFKDGDCSS RLLLRFTHA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17907A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269|PubMed:18065552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009441e-151AK100944.1 Oryza sativa Japonica Group cDNA clone:J023138F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191576.13e-94basic leucine zipper 2-like
SwissprotQ5QNI58e-89BZP02_ORYSJ; Basic leucine zipper 2
TrEMBLA0A3B6ATW91e-100A0A3B6ATW9_WHEAT; Uncharacterized protein
STRINGTraes_2AS_6EA1E372F.11e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-59bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]