PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17773A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 463aa    MW: 52262.9 Da    PI: 6.2073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17773AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.9e-1558142190
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                f+k++++s+v    +l lp kf+++h      +++ ++led++g+  + ++     +++  l++GW++F+  + Lk+gD+vvF+
  Oropetium_20150105_17773A  58 FVKEMLKSHVVLGFWLGLPSKFCNQHlP---MSDTRIVLEDQNGENRDANY--LAAKQG--LSAGWRGFAIKHLLKVGDVVVFE 134
                                89*********************99952...35567***************..666655..9********************** PP

                                E-SS.SEE CS
                         B3  84 ldgr.sef 90 
                                l++  s++
  Oropetium_20150105_17773A 135 LVDVgSNK 142
                                98654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1652139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1953137IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-2156152No hitNo description
SMARTSM010191.6E-1358155IPR003340B3 DNA binding domain
PROSITE profilePS5086311.15258155IPR003340B3 DNA binding domain
PfamPF023623.0E-1358142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEQKMASHHA NDSKLHLTHQ NEAQNFDTWH KFIRGNCGFA MDRAKEVQAK LPAQHPSFVK  60
EMLKSHVVLG FWLGLPSKFC NQHLPMSDTR IVLEDQNGEN RDANYLAAKQ GLSAGWRGFA  120
IKHLLKVGDV VVFELVDVGS NKEPPKFKAS IFYPQRYPNF LNAPLLYVYI VRENEFTTAD  180
GAVSLRNLEA CNEGKLLGMS AGKMFLYSAI LDISMIRRNE LINTVPPESS EEESAGELKS  240
EESPKVHTVR GEQVPWIDAN GIVSEAIDGI RVLDSDVEFE DVTSFSNFNI IVDGLVIDCR  300
FHEHLRRTYY ELCCSQKAFL HKRLLKQLNL TLVVGVIMET VNIAEGVRGT CKAEAPCRED  360
FLVWKKTLES FEILGMDVAF LLRRVDAMLS LQTQSRRNIS ECQEYKELRL DSARAAEQVK  420
ALELQLSGVK KVLQKLDEDM KEVESSVKKS EVALQELATA PW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17773A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660753.11e-164B3 domain-containing protein Os01g0234100
TrEMBLA0A0A9PFY51e-164A0A0A9PFY5_ARUDO; Uncharacterized protein
STRINGPavir.Eb00031.1.p1e-156(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-26B3 family protein