PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17746A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19776.7 Da PI: 9.9623 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99 | 4.8e-31 | 7 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilk 82 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ +e r++a+++l++eA +r rdP +G+++ + Oropetium_20150105_17746A 7 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLVVKANATEpaRRRAAETLTWEALWRERDPSEGCYREVAG 90 7********************************************9888555445***************************** PP DUF260 83 lqqqleqlkaelallkee 100 l+++ + l++e a+l+++ Oropetium_20150105_17746A 91 LRRENAVLRSENAALRRQ 108 ********9999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.317 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-27 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MMTSGGACAV CKHQRRKCEP NCELAAYFPA NRMNDFRALH LVFGVANLTK LVVKANATEP 60 ARRRAAETLT WEALWRERDP SEGCYREVAG LRRENAVLRS ENAALRRQFA SYGGGVAGGC 120 YNSNNGSAAP ANGGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAAITM IRGNMNNPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-18 | 4 | 119 | 8 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-18 | 4 | 119 | 8 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17746A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 5e-99 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314390.1 | 2e-60 | LOB domain-containing protein 7 | ||||
TrEMBL | I1HDS9 | 5e-59 | I1HDS9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G08480.1 | 8e-60 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-23 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17746A |