PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17511A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 137aa    MW: 14991.7 Da    PI: 11.1649
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17511AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.51.9e-1554114161
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                +ke +r +r+ +NR++A+  R+RKk+++ eLe +vk Le+ N++L ++l++l++e + l++
  Oropetium_20150105_17511A  54 DKEHRRLKRLLRNRVSAQQARERKKQYLTELEVRVKDLEKRNSELEERLSTLQNENQMLRQ 114
                                58899***************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000419.8E-55369IPR001630cAMP response element binding (CREB) protein
SMARTSM003382.0E-1454118IPR004827Basic-leucine zipper domain
PfamPF001701.7E-1355114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.70256119IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-1758118No hitNo description
SuperFamilySSF579593.06E-1358116No hitNo description
PROSITE patternPS0003606176IPR004827Basic-leucine zipper domain
CDDcd147042.76E-1368110No hitNo description
PRINTSPR000419.8E-57191IPR001630cAMP response element binding (CREB) protein
PRINTSPR000419.8E-591108IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MESDVEIRRV PEFGTAEQAG PSTSSGKETA AAAGTSSLAI QAATARRSGR SSADKEHRRL  60
KRLLRNRVSA QQARERKKQY LTELEVRVKD LEKRNSELEE RLSTLQNENQ MLRQVLKNTT  120
VNRRGPGGSS AGGDGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A9e-1680118442Transcription factor HY5
2oqq_B9e-1680118442Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17511A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925239.11e-56transcription factor HY5 isoform X2
SwissprotQ9SM501e-46HY5_SOLLC; Transcription factor HY5
TrEMBLA0A2H3XK356e-55A0A2H3XK35_PHODC; transcription factor HY5-like isoform X1
TrEMBLA0A2H3XK825e-55A0A2H3XK82_PHODC; transcription factor HY5-like isoform X2
STRINGXP_008784994.11e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-44bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]