PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17186A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 38aa    MW: 4599.33 Da    PI: 12.3951
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17186AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.81.2e-109343156
                               HHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56
                               ++ +++lgL+ rq+k+WFqNrR++ k
  Oropetium_20150105_17186A  9 TRTSRELGLKPRQIKFWFQNRRTQIK 34
                               56689*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000465.7E-81034IPR001356Homeobox domain
SuperFamilySSF466891.5E-81136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-91135IPR009057Homeodomain-like
PROSITE profilePS5007110.4141236IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 38 aa     Download sequence    Send to blast
SPRSARILTR TSRELGLKPR QIKFWFQNRR TQIKEHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17186A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.14e-11homeobox-7