PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17005A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 391aa    MW: 42307.5 Da    PI: 7.4345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17005AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52111391128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat++g
  Oropetium_20150105_17005A  11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAG 93 
                                69****************************.9***************952444443456************************* PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +Wkatg+dk+++s  ++ +g++ktLvfykgrap+g+k+dW+mheyrl
  Oropetium_20150105_17005A  94 FWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                                *************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-567183IPR003441NAC domain
PROSITE profilePS5100555.58811183IPR003441NAC domain
PfamPF023656.8E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSCTRR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD EVHPAAGAGG DPYYSPPPPP AMRGAAGGEQ AEEGWVICRV  180
FKKKNIVGQS SGGATVTTSH AAAASKQTTM AAATAASMTM ESSPTSNCSS VTVSDHVKAQ  240
MLHSSSASDD ALDHILQYMN RSSSSCHNNN KLQDTKPALM DHHHLASAAA TACPAMIYGR  300
FMKLPPLEHV GAAGLLPPNT AAAEYASGIA DWDSLDRLTA YEFNGLSDAS KNMSSFLDET  360
SAAAADGDLW SLARSVSLSS LHADLTMNNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-47818514167NO APICAL MERISTEM PROTEIN
1ut4_B9e-47818514167NO APICAL MERISTEM PROTEIN
1ut7_A9e-47818514167NO APICAL MERISTEM PROTEIN
1ut7_B9e-47818514167NO APICAL MERISTEM PROTEIN
3swm_A1e-46818517170NAC domain-containing protein 19
3swm_B1e-46818517170NAC domain-containing protein 19
3swm_C1e-46818517170NAC domain-containing protein 19
3swm_D1e-46818517170NAC domain-containing protein 19
3swp_A1e-46818517170NAC domain-containing protein 19
3swp_B1e-46818517170NAC domain-containing protein 19
3swp_C1e-46818517170NAC domain-containing protein 19
3swp_D1e-46818517170NAC domain-containing protein 19
4dul_A9e-47818514167NAC domain-containing protein 19
4dul_B9e-47818514167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00016PBMTransfer from AT1G32770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17005A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750801e-180KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681409.10.0NAC domain-containing protein 43
TrEMBLA0A1E5VDB90.0A0A1E5VDB9_9POAL; NAC domain-containing protein 43
STRINGSi006565m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.17e-85NAC family protein