PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16882A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 516aa    MW: 56653.6 Da    PI: 8.1751
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16882AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.16.9e-093293661954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Oropetium_20150105_16882A 329 FEHflHPYPNDVDKHVLARQTGLSRSQVSNWFINARVR 366
                                554459******************************88 PP
2BELL94.78.4e-31181249371
                       BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                +el+++k++Lls+++eVd+rY++y++q++ v   Feavag+g++++Yt+lA +a+SrhFrcL+da++ q
  Oropetium_20150105_16882A 181 MELERRKVRLLSMVQEVDRRYRRYRDQMKSVEVWFEAVAGVGASQVYTRLARRAMSRHFRCLRDALVAQ 249
                                799**************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-47109248IPR006563POX domain
PfamPF075267.9E-41115246IPR006563POX domain
PROSITE profilePS5007112.147307370IPR001356Homeobox domain
CDDcd000864.59E-12310371No hitNo description
SMARTSM003893.9E-9310374IPR001356Homeobox domain
SuperFamilySSF466894.71E-17311378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-27313376IPR009057Homeodomain-like
PfamPF059201.8E-17327366IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAVHQPHLLD FSSPPPPSGF DNDGLLALHV VDMQSGGDAG VLSGDDTAPP IWPQDAVSSL  60
SLFNNYSSTA TAAGASLASH HHHRPAPPVV PVEPNQLLLQ VVPAEESLLQ RPFQLRSSKY  120
LAPVRELLSE FCSLEGDLFH AAVNAKRTAA NNKAGDDVEA MPSSGGLWGS PSLMMSSMDL  180
MELERRKVRL LSMVQEVDRR YRRYRDQMKS VEVWFEAVAG VGASQVYTRL ARRAMSRHFR  240
CLRDALVAQX XXXXXXXXXG VAGSSSAPPP AGATKGATPR LRVLEKSLRQ QRAFQQHSSV  300
GAMEMMNRPW RPQRGLPERA VAVLRAWLFE HFLHPYPNDV DKHVLARQTG LSRSQVSNWF  360
INARVRLWKP MIEDMYKDEV NPQQPAAEAA NHYAPARSTI VKTERMSTSS SILGGERSYC  420
YQQLHGSVGT GGSSSIIATD SVYSKLSEPD ELNGSTHSAA AVSLTLGLQQ QQPFASSMMQ  480
QQLSWGLVLE DQHSVVLPHR NLMGFQSQSL HDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-15316373158Homeobox protein Meis1
4xrs_B4e-15316373158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16882A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399091e-80BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds.
GenBankKJ7282861e-80KJ728286.1 Zea mays clone pUT6565 HB transcription factor (HB38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.11e-163homeobox protein BEL1 homolog
RefseqXP_004964303.11e-163homeobox protein BEL1 homolog
TrEMBLK3XWJ51e-162K3XWJ5_SETIT; Uncharacterized protein
STRINGSi006303m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-74TALE family protein