PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16749A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 28139.1 Da PI: 5.3043 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 71 | 91 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cg+ F ++ +L H+r+H Oropetium_20150105_16749A 71 CRQCGELFGSWRSLFGHMRSH 91 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.224 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00018 | 0 | 97 | 109 | IPR018247 | EF-Hand 1, calcium-binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRSHLSASTE ADVDDEVNRE PSNFGRSTNG GVVGYGLSEN PRKTRRLSDL ADEEENDDGA 60 DGDGDGEHKA CRQCGELFGS WRSLFGHMRS HASGGRDRDE DDAVDVDEFV PVPEEAEAEE 120 VEIVKAPVLA PAPVAVLSTA PRRRRRTMRV AAPAPAPTPV LSAGFEKDQE DVALCLLMLS 180 RDARLSRSSP VKEEEAVGKE GDHKNAVAKQ ARLARNSYAY DSDEDSALLQ YGPAKIKIKS 240 RKRRSSPKIQ CQAAPKRT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | RRRRRT |
2 | 239 | 244 | SRKRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16749A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182857.1 | 4e-48 | zinc finger protein ZAT9-like | ||||
Refseq | XP_021308538.1 | 2e-48 | zinc finger protein 865 | ||||
TrEMBL | A0A3L6TCN7 | 6e-52 | A0A3L6TCN7_PANMI; Uncharacterized protein | ||||
STRING | Traes_2BS_ACA52BC08.1 | 9e-52 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-06 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16749A |