PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16688A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 597aa    MW: 64493 Da    PI: 5.6865
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16688AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.71.5e-981915953374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fs 85 
                                +lLlecA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+
  Oropetium_20150105_16688A 191 QLLLECARAVAARDSQRVQQLMWMLNELASPYGDMEQKLASYFLQGLFARLTTSGPRTLRTLAAASDRNT-SFDSTRRTALrFQ 273
                                79************************************************************99888744.44444444446** PP

                       GRAS  86 evsPilkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....sk 155
                                e+sP+  f+h++aN aIle++ ++        +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      +
  Oropetium_20150105_16688A 274 ELSPWSSFGHVAANGAILESFLEAaaaspdqpQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQ 357
                                *******************9977767778888999************************889***********98888999999 PP

                       GRAS 156 eeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                + ++e+g+r++kfA+ +gvpf+f+++++  +l++l+l++L+++      alaVn++ +l  ++  ++  +  rd+++ ++++l 
  Oropetium_20150105_16688A 358 RVMREIGQRMEKFARLMGVPFSFRAVHHAgDLAELDLDALDLRDggaTTALAVNCINSLRGVV--PGGARR-RDAFVAALRRLD 438
                                9************************97767**************888889************9..555555.99********** PP

                       GRAS 236 Pkvvvvveqeadh.nse............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                P+vv+vve+ead+   +            +Fl+ f+e l+++sa +dsl++++p++s+er  +Er   gr+iv++v+c  +e+ 
  Oropetium_20150105_16688A 439 PRVVTVVEEEADLvA-SdgeegggdseeaTFLKVFSEGLRFFSAYMDSLDESFPKTSNERLALERG-AGRAIVDLVSCPASESM 520
                                **********99953.4478999999999*************************************.***************** PP

                       GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkdrpLvsvSaWr 374
                                er+et+++W++r+++aGF+pv++se++a+++++llr++  +g+++ +          + ++l Wk++pLv++SaWr
  Oropetium_20150105_16688A 521 ERRETAASWERRMRSAGFSPVAFSEDVADDVRSLLRRYR-EGWSMRDAnqdessaaGAGVFLAWKEQPLVWASAWR 595
                                **************************************9.777776332344556345566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.666163568IPR005202Transcription factor GRAS
PfamPF035145.3E-96191595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQHHQQ QQSPSYNSRS TTSSGSRSSS HQTNASYNYY YHSTSSGGGG  60
GQYYYGQHHQ QQYYLEPYQE ECGNTHHLYM DEDFSSSSSS RQQQHLHSSH GGGTVQPPTS  120
SVATPTAPTP PLSTSSTAAA HHALFEAADL SYPPDLNLDF SSPASSSGGG GGAASSAAAV  180
GGGGGGRWGS QLLLECARAV AARDSQRVQQ LMWMLNELAS PYGDMEQKLA SYFLQGLFAR  240
LTTSGPRTLR TLAAASDRNT SFDSTRRTAL RFQELSPWSS FGHVAANGAI LESFLEAAAA  300
SPDQPQRFHI LDLSNTFCTQ WPTLLEALAT RSADDTPHLS ITTVVSAAPS APTAAVQRVM  360
REIGQRMEKF ARLMGVPFSF RAVHHAGDLA ELDLDALDLR DGGATTALAV NCINSLRGVV  420
PGGARRRDAF VAALRRLDPR VVTVVEEEAD LVASDGEEGG GDSEEATFLK VFSEGLRFFS  480
AYMDSLDESF PKTSNERLAL ERGAGRAIVD LVSCPASESM ERRETAASWE RRMRSAGFSP  540
VAFSEDVADD VRSLLRRYRE GWSMRDANQD ESSAAGAGVF LAWKEQPLVW ASAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-16018459682474Protein SHORT-ROOT
5b3h_B1e-16118459628420Protein SHORT-ROOT
5b3h_E1e-16118459628420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16688A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958171.10.0protein SHORT-ROOT 1
RefseqXP_008670524.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLF2E4A50.0F2E4A5_HORVV; Predicted protein
STRINGMLOC_62665.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-141GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]