PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16667A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 280aa    MW: 30551.2 Da    PI: 7.28
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16667AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12.2e-343189159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                               ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Oropetium_20150105_16667A 31 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 89
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-381691IPR003657WRKY domain
SuperFamilySSF1182901.7E-302391IPR003657WRKY domain
PROSITE profilePS5081138.2972691IPR003657WRKY domain
SMARTSM007746.5E-403190IPR003657WRKY domain
PfamPF031064.1E-273289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESAGIDAAL MGKPNREPRV VVQTVSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTHT  60
GCPVRKHVER ASHDPKSVIT TYEGKHNHEV PASRNASHEM STASMKTAVH PINSNMPGLG  120
GMMRACEART FANQFSQAAE SDTISLDLGV GISPNHSDVT NQMQNSVPEP MQYQMQSMAP  180
VYNSMGIPGM PVQTIHGNAA NGLYGSKEEK GSEGFTFKAA PLDRSSNLCY SSADNESEAL  240
KVYQRAAAFT RDLSGVQKSL YVMALEPYNS LYSEAFTIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-392292878Probable WRKY transcription factor 4
2lex_A5e-392292878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16667A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.11e-155WRKY transcription factor SUSIBA2
SwissprotQ6VWJ61e-133WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZRL51e-154K3ZRL5_SETIT; Uncharacterized protein
TrEMBLK3ZT341e-156K3ZT34_SETIT; Uncharacterized protein
STRINGSi029245m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.15e-54WRKY family protein