PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16583A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 387aa    MW: 42300.8 Da    PI: 8.6649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16583AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06358380223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                +Cp+C+k F+++ +L+ H  + H
  Oropetium_20150105_16583A 358 VCPKCHKAFRDPVLLVEHVERdH 380
                                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.2E-12105161No hitNo description
Gene3DG3DSA:4.10.1110.106.5E-11105156IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.762115161IPR000058Zinc finger, AN1-type
SMARTSM001540.0032118157IPR000058Zinc finger, AN1-type
PfamPF014281.9E-13118155IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.3E-10196255IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.71E-9198252No hitNo description
PROSITE profilePS510397.751203250IPR000058Zinc finger, AN1-type
SMARTSM001540.073206247IPR000058Zinc finger, AN1-type
PfamPF014285.3E-8206245IPR000058Zinc finger, AN1-type
SMARTSM003550.5320343IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322343IPR007087Zinc finger, C2H2
SMARTSM003557357380IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642357385IPR007087Zinc finger, C2H2
PROSITE patternPS000280359380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVPTPSKASS AGGPGKQTTP QFEGFTAKTT HPSNRCYVYS TSVPGLCRLT TEPPSPFCPV  60
PGFLPSPRPP LAPCPPVPAP RRRQHPAAEE AAFSQVSRNA KVSCGMGTPE FPNLGKHCSV  120
GDCRQIDFLP FTCDRCDHVF CLQHRSYTSH QCPNANLKDV TVLICPLCAQ GVRLNPNEDP  180
NITWDSHVNT DCDPSNYQKV TRKRKCPVPG CRETLTFSNT IRCKDCTKEH CLKHRFGPDH  240
KCPGPRKMDS AFSFSNMLRR SQKGETRSSS TKNSSSWWST FKTSAEAGMQ KLSTATSEVI  300
QKAKDGISLD SSSSSSDLVE QCVHCPARFS TVGALIEHAE KSHQTNSQSS RGKVTIDVCP  360
KCHKAFRDPV LLVEHVERDH GGSSRA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16583A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412061e-153BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460884.11e-173zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-165SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6T7A11e-173A0A3L6T7A1_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.J03938.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]