PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_16409A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 155aa MW: 17245.6 Da PI: 8.2293 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.6 | 1.1e-17 | 82 | 138 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +++r +r+++NRe+A rsR+RK+a++e+Le++v L eN +Lkk+ +elk ev++l Oropetium_20150105_16409A 82 DDRRSIRMMRNRESALRSRARKRAYVENLEKEVRRLVDENLKLKKQCKELKLEVSAL 138 5799****************************************9999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-14 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.9E-16 | 80 | 138 | No hit | No description |
PROSITE profile | PS50217 | 11.553 | 82 | 138 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.5E-15 | 83 | 138 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.58E-17 | 84 | 138 | No hit | No description |
SuperFamily | SSF57959 | 1.81E-12 | 84 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAANYHHYQM AAMTAAAWRE PESPQLSFVS GCSSLFSIST LQDDDDGDAV VIAGHALPST 60 PLSLAGFAGD EVDMEVQQIS GDDRRSIRMM RNRESALRSR ARKRAYVENL EKEVRRLVDE 120 NLKLKKQCKE LKLEVSALVL PTRSSLRRTS STQF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_16409A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033858 | 1e-110 | BT033858.1 Zea mays full-length cDNA clone ZM_BFc0165B20 mRNA, complete cds. | |||
GenBank | JX469961 | 1e-110 | JX469961.1 Zea mays subsp. mays clone UT3223 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812603.1 | 2e-96 | bZIP transcription factor 46-like | ||||
TrEMBL | A0A2S3HG73 | 4e-95 | A0A2S3HG73_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU08 | 4e-95 | A0A2T7DU08_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PES2 | 4e-95 | A0A3L6PES2_PANMI; Protein FD-like | ||||
STRING | Si007412m | 1e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40950.1 | 5e-08 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_16409A |