PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16369A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

DBB

Protein Properties

Length: 295aa MW: 31432.9 Da PI: 4.6275

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16369A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.8e-07	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ ++ +++ C ++ lC C H+ H++vpl Oropetium_20150105_16369A 4 NCDVCGAEPAAVLCCADEAALCSACDRRVHRAnklagkHRRVPL 47 7***************************779999999986 PP
2	zf-B_box	24.9	4.1e-08	60	101	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++e + fC +++ lC dC + +H+ Ht Oropetium_20150105_16369A 60 GPLCDVCKERRGLVFCVEDRAILCTDCDDPIHNAndltakHT 101 689*****************************7677777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	9.6E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.31	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.5E-6	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.71E-8	5	47	No hit	No description
SMART	SM00336	2.9E-14	58	105	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.343	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-5	60	102	IPR000315	B-box-type zinc finger
CDD	cd00021	2.32E-7	61	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MRVNCDVCGA EPAAVLCCAD EAALCSACDR RVHRANKLAG KHRRVPLVHP SSGSGSDDDG 60 PLCDVCKERR GLVFCVEDRA ILCTDCDDPI HNANDLTAKH TRFLLVGAKL SATALVDQEP 120 SSPVHSADGG GESDCVPVPA AACAQPADKS SSVLECGSDD NNGGAMISDY LTNICPGWRV 180 DDLLFDESPF TATKPGRDEH VPSMDADLFD VVAGRSEKRD AWGPPSWTGE LLHFEKVPTA 240 APTTTTTGKQ GRVRDTTYWD INTDNSNNDS DAFAVPEITP PPAKKARPSS YWCF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16369A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB001884	2e-84	AB001884.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1479.
GenBank	AK105957	2e-84	AK105957.1 Oryza sativa Japonica Group cDNA clone:001-205-D08, full insert sequence.
GenBank	AP004329	2e-84	AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBank	AP005463	2e-84	AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBank	AP014962	2e-84	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812143.1	1e-104	B-box zinc finger protein 20-like
TrEMBL	A0A2T7DU71	1e-104	A0A2T7DU71_9POAL; Uncharacterized protein
STRING	BRADI1G35030.1	1e-102	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-43	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16369A