PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16300A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 1159aa    MW: 128139 Da    PI: 6.44
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16300AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22150251199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +g
  Oropetium_20150105_16300A 150 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAG 231
                                99*****************************954.4444.48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++++l+++++r+
  Oropetium_20150105_16300A 232 DSVIFV--RDEKQQLLLGIRRA 251
                                ******..5688889****997 PP
2Auxin_resp118.36.4e-39276359183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Oropetium_20150105_16300A 276 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 359
                                79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF1019361.31E-42139279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-41142265IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-19149241No hitNo description
PfamPF023623.5E-20150251IPR003340B3 DNA binding domain
SMARTSM010192.4E-22150252IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829150252IPR003340B3 DNA binding domain
PfamPF065071.1E-33276359IPR010525Auxin response factor
PfamPF023091.3E-910231110IPR033389AUX/IAA domain
PROSITE profilePS5174527.44810251109IPR000270PB1 domain
SuperFamilySSF542772.35E-710371104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MMMKQQQQQQ PPAVSPACPP AAAAAAAAVA AGGCEGEKKA PTINSELWHA CAGPLVSLPP  60
AGSLVVYFPQ GHSEQVAASV QKDVDAHVPS YPNLPSKLIC LLHNVTLHAD PETDEVYAQM  120
TLQPVTSYGK EALQLSELAL KQPRPQTEFF CKTLTASDTS THGGFSVPRR SAEKIFPPLD  180
FSMQPPAQEI QARDLHDNIW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVIFVRDE  240
KQQLLLGIRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPTEFV  300
VPFAKYQKAL YGNQISLGMR FRMMFETEEL GTRRYMGTIT GISDLDPVRW KNSQWRNLQV  360
GWDESAAGER RNRVSIWEIE PVAAPFFLCP PPFFGAKRPR QLDDESSEME NLLKRAMPWL  420
GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QSSSFANTAM QSEYLRSLSN PNMQNLGASD  480
LSRQLCLQNQ IMQQNNIQFN SSKLPQQMQP INELPKAAVP HNQIGVGIKQ QEQTEEPNNM  540
QRQQQSLNQL LPLSQSQTSL VQAQVLAQNQ MQQQQAPSVM QNLQPAASQP LLVSQQQQQQ  600
QQQQQQQQQQ KLQQQQQFLL QQQQLQQHQQ NQQQLNKISA QVPNLVSPQI PLSDQRQLLL  660
QKLQQQQSLL SQPAVTLAQL PLIPEQQKLF LDIQQQLSNS HSLSQQQSTP QQSTKIPSVA  720
TPAPLPPPIM QQESPQKLRQ KHVAFTDPSQ ATMPLTTTAN VVSGAGSPLM TAGATHSVLT  780
EEIPSCSTSP STANGSHLLP PVLGRDKQCD MINNEKVPQS TPPMSIPSSL EAVTTPARMT  840
KELPKQNSSV KPSIMASKLL NAGTGPQNFM NGAPPIDYLE TASSATSVWL SQTDGLLHQG  900
FPMSNFNQQQ MFKDAPPETE IQDADPSNNA LFGINGDGQL GFPMGADALL SNGIDAAKYE  960
NHMSTDIDAN YRIAKDAQQE LSSSMVSQSF GASDMAFNSI DSAINEGAFL NRTSWPPTAP  1020
LKRMRTFTKV YKRGAVGRSI DISQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH  1080
EDDILLLGDD PWEEFVNCVK CIRILSPQEV QQMSLDGDLG NNILPNQACS SSDGGNAWRA  1140
RCDQNSGNPS TGSYDHYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1683938047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16300A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437545.20.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLC5Z9870.0C5Z987_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19