PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16248A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 746aa    MW: 80007.4 Da    PI: 4.855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16248AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.89.9e-1126566128
                        NAM  66 kkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++y+ g r+ r +   g+Wk+  k+++++ ++++++g+ ++L+f  g++p+g +t W m+ey++
  Oropetium_20150105_16248A   2 RRYPFGGRPARgVEGVGFWKSNTKETDIVLNDNTVIGTVTSLTFELGHQPHGIQTPWKMKEYSV 65 
                                5688899999*77889**************9*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.063190IPR003441NAC domain
SuperFamilySSF1019411.44E-15290IPR003441NAC domain
PfamPF078397.9E-14685736IPR012417Calmodulin-binding domain, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MRRYPFGGRP ARGVEGVGFW KSNTKETDIV LNDNTVIGTV TSLTFELGHQ PHGIQTPWKM  60
KEYSVPEKRY LSDGLNMRLD DWVLCKIYYR GNGHDDTDPP RVLAEHDDID EDTDAPEGYE  120
DGMTVEQGDE PANIADEGVG EAKQKQPMAT RPSPRSSDGI RPRSKNGTGS SSRPPSSSGA  180
SRPTTGSRSS ASSSSDKPLP SFLRPTVSSS LHXXXXXXXX XXXXXXXXXX XKSPAAATAK  240
RSAEKSPAQP LVSPMPVTSK EKAKAAPAAS TSRWSAKQLM QKATNAINKA TKSRSKTSKE  300
AATSSSSAKE AAKPAASASF KKAAASSSSG KEAAGLAVAS GSVKEASNSA SSKEPATASS  360
ADKNETVRPQ PVEEQNKHSD TPAESPSPTV QAEEAFVLEP KAEQSEQHAA AATSPQEVAG  420
TDITNVEERD QTERVAAEQP TKESEEEAEK HILVAIENEC QKNTANDQSP AVVVEEAAKV  480
AATLEAEDEP ATSAVEVVEE TRSEERHQEE AMKPEDVVER SESRVVSAEP KEERGVVTEE  540
PKEETGVISE EPKEQPSVIT EEQPKEEASL INEQIKEEPA TVNKQEKVAE ENKVPVASSA  600
SAPSTPTKDA IEDDETVLKQ VSASEPVSPV QDAVSKEKDK AVIETLLSAS APATPSRPVD  660
KAGASRQAAI PEESSSKLAF KGRRVKTAME KRSDEEQPKK KEVTRSNDVI EETKSKLLEK  720
RKSKVKALVG AFETVMDSPR SSKAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16248A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681931.11e-124muscle M-line assembly protein unc-89
TrEMBLA0A368QXV41e-123A0A368QXV4_SETIT; Uncharacterized protein
STRINGSi006151m1e-123(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-13NAC family protein