PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15897A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | Nin-like | ||||||||
Protein Properties | Length: 243aa MW: 28589.7 Da PI: 6.929 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.2 | 1.6e-28 | 113 | 163 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Oropetium_20150105_15897A 113 EKTLTFELVSQYFYMPITQAARELDVGLTLLKKRCRELGIPRWPHRKMKSL 163 899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.007 | 98 | 183 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-22 | 115 | 163 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEAKQEDSWW PYWTNAWPDN YLLEEEALLS DLSLQSLHFQ PSSYSAITPS NVLQERICIV 60 RAECIVLRGT DELDNIFKDD VLRHWDEMEQ VDTKIDERQN GLSPLYYRED KEEKTLTFEL 120 VSQYFYMPIT QAARELDVGL TLLKKRCREL GIPRWPHRKM KSLQTLINNV QVLQEAGKAT 180 GEGQLRAMVE MLQQEKQLLE KRPHVQLEEK TKRLRQACFK ANYKKRRLLA LETGQASRIQ 240 KY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15897A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003509 | 1e-32 | AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01. | |||
GenBank | AP003569 | 1e-32 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 1e-32 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-32 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966836.1 | 1e-110 | protein RKD2 | ||||
Swissprot | Q9M9U9 | 4e-44 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A1E5W6J3 | 1e-116 | A0A1E5W6J3_9POAL; Protein RKD1 (Fragment) | ||||
STRING | Si008273m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-46 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15897A |