PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_15754A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 387aa MW: 42423.3 Da PI: 10.1581 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.5e-30 | 243 | 302 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +Cpvkkkv+rsaed++v++ tYegeHnh Oropetium_20150105_15754A 243 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCPVKKKVQRSAEDKTVLVATYEGEHNHG 302 58***************************99****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.165 | 238 | 304 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-29 | 242 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-25 | 242 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.8E-35 | 243 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 244 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGHNTPEPRL LHSAPHLHPA PSYSSPRSRV DLCFLRLSIG QTVDTQQFLP GVLDHIMDPW 60 IGQPSLSLDL NVGLPTTARP ATTTKVLMEE KNFLSSVKKG RDQVHVEALQ AELRRVSDEN 120 KHLSEMLRSV VAKYTELQGH VSDMMASAGH SGGARQSSTS EGGSAASPSR KRIRSDNSGD 180 RKPSPPTMAT TGRFVVTDQT EXXXXXXXXX XXXXXXRRIR EECKPKVSRR YVHADPSDLS 240 LVVKDGYQWR KYGQKVTKDN PCPRAYFRCS FAPSCPVKKK VQRSAEDKTV LVATYEGEHN 300 HGQPTQHEGG KSAASAKPPP TATRSLSPPQ QKQTAEAMVG PSSSEVVMRK NLAEHMAATL 360 TRDPGFKAAL VSALSGRILE LSPTRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 239 | 304 | 10 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00465 | DAP | Transfer from AT4G31800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_15754A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728369 | 1e-109 | KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438757.1 | 1e-143 | WRKY transcription factor WRKY28 | ||||
Swissprot | Q0DAJ3 | 1e-133 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | C5Z6T5 | 1e-141 | C5Z6T5_SORBI; Uncharacterized protein | ||||
STRING | Sb10g025600.1 | 1e-142 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-51 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_15754A |