PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15675A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 310aa MW: 33767.5 Da PI: 6.5436

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15675A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.1	3.4e-17	145	196	4	55
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr rr+ +NRe+ArrsRq+K+a++ eLe v++L++eN++L k+l e +++ Oropetium_20150105_15675A 145 TKRIRRMVSNRESARRSRQKKQAQLTELESQVEQLKGENSTLFKQLAEANQQ 196 69*****************************************877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-16	140	206	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	144	196	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.7E-15	144	196	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-14	146	197	No hit	No description
SuperFamily	SSF57959	7.5E-13	146	197	No hit	No description
CDD	cd14702	6.23E-19	147	197	No hit	No description
PROSITE pattern	PS00036	0	149	164	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MKKCASELQL EAFIREDTAT GRNEPSRRPE AGGLDEPAGA RASSGVFSSA ADRLPSIGFG 60 DQQNSTDGSN DDSFWWSRSI IRTPEPASST TVEWQRANIS AVAASLSRTR STNHGHQSES 120 SDSDSESLID EEGVPCERRN KSLQTKRIRR MVSNRESARR SRQKKQAQLT ELESQVEQLK 180 GENSTLFKQL AEANQQFTTA VTDNRILKSD VEALRIKVKM AEDMVARSAM SCGLGDIGLA 240 PLLNSRKICQ ALDMLTVKGL DLLGRDACFR GPTPARQVQN SSVQSTASLD SLDNQKSSEA 300 TSCAVDIWP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	RRSRQKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15675A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-112	bZIP transcription factor RISBZ5
Swissprot	Q654B3	2e-90	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0A9PGC1	1e-117	A0A0A9PGC1_ARUDO; Uncharacterized protein
STRING	Si007043m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	3e-37	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15675A

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]