PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15648A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 25911.4 Da    PI: 6.7897
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15648AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.8e-28959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien   rqvtfskRr+g+lKKA+EL vLCdaev viifs+++kl+eys+
  Oropetium_20150105_15648A  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDAEVGVIIFSENDKLFEYSN 59
                               79***********************************************95 PP
2K-box46.41.7e-1681147975
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                                ++ ++ +++  e+a+L  e e+L++ +R  +GedL sLs+ +L++Leq++++ l+k+R++K+el  +
  Oropetium_20150105_15648A  81 KAYRDDQKMLVEMARLMTEKEQLESDHRICIGEDLASLSVDDLNELEQHVQSLLSKVRARKHELQNQ 147
                                455677999****************************************************998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-30290IPR002100Transcription factor, MADS-box
CDDcd002653.98E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-1385155IPR002487Transcription factor, K-box
PROSITE profilePS5129710.54186172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGRVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD AEVGVIIFSE NDKLFEYSNP  60
RCSMSDLVRQ YETATNAQLD KAYRDDQKML VEMARLMTEK EQLESDHRIC IGEDLASLSV  120
DDLNELEQHV QSLLSKVRAR KHELQNQLLL RHKSHESGRD AAAGDIDQME EMALSGSLEL  180
FPMEPVPVLS TVLQLWPQSD SVGGSGSSSP RGGATSRSRT RASPGCGLQL W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17158158MEF2C
5f28_B5e-17158158MEF2C
5f28_C5e-17158158MEF2C
5f28_D5e-17158158MEF2C
6bz1_A5e-17160160MEF2 CHIMERA
6bz1_B5e-17160160MEF2 CHIMERA
6bz1_C5e-17160160MEF2 CHIMERA
6bz1_D5e-17160160MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15648A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811394.13e-63MADS-box transcription factor 30-like
TrEMBLA0A2S3HH795e-62A0A2S3HH79_9POAL; Uncharacterized protein
STRINGPavir.J10823.1.p4e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.15e-40MIKC_MADS family protein