PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15377A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 497aa    MW: 54010.9 Da    PI: 6.7276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15377AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17161210155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Oropetium_20150105_15377A 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 210
                                78*******************......55************************997 PP
2AP229.71.6e-09253294146
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa++ 
  Oropetium_20150105_15377A 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARLL 294
                                89********.7******5553..2.26**********88***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-9161210IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-16161219IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-17162219IPR001471AP2/ERF domain
CDDcd000187.42E-11162220No hitNo description
PROSITE profilePS5103217.794162218IPR001471AP2/ERF domain
SMARTSM003803.3E-32162224IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-11253327IPR016177DNA-binding domain
PfamPF008472.2E-5253295IPR001471AP2/ERF domain
CDDcd000184.00E-21253328No hitNo description
Gene3DG3DSA:3.30.730.102.7E-5254292IPR001471AP2/ERF domain
PROSITE profilePS510329.69254326IPR001471AP2/ERF domain
SMARTSM003806.6E-24254332IPR001471AP2/ERF domain
PRINTSPR003675.4E-6255266IPR001471AP2/ERF domain
PRINTSPR003675.4E-6308328IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MELDLNDVAE VASEKPASAA RSDSGTSESS VLMNAEASAA PAEEGSSSTP AVLEFSILRS  60
DSDAAGAEDD DDDATPSPPR QQPPPQLVTR ELFPAAAGLA RPGPPHWTEL GFFRAEPPPR  120
TQQPDIRILP HPHAPVPAPA PPPVQPQAAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLS DYEDDMKQMK SLSKEEFVHV  240
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARLLILDSAI  300
DDSFFILAYD KAAIKCNGRE AVTNFEPSTY DGELLTEVGS EGADVDLNLS ISQPASQSPK  360
RDKNSLGLQL HHGSFDGSEL KRAKASIDSA SELAGRTHHR FPLLTEHPPI WPAQSHPFFS  420
NNEDASREHN NRRAEGGVPN WAWKVTTAPP SLPVPLFSSS SSSVAASSGF STTAAPAAPS  480
ANLRFDLSSS SRTHHR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15377A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303261.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotB8AXC30.0AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0N7BW920.0A0A0N7BW92_DENLA; Transcription factor AP2
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-96related to AP2.7