PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15269A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 382aa    MW: 42877.8 Da    PI: 8.0703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15269AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002794116323
                                ET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                C+  +Cgk+F + s L++H  +H
  Oropetium_20150105_15269A  94 CSyeNCGKTFVDVSALRKHAHVH 116
                                77779**************9887 PP
2zf-C2H2193.7e-06121145123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                y C+  +Cgk F ++s LkrH  tH
  Oropetium_20150105_15269A 121 YICQepNCGKKFVDSSKLKRHHLTH 145
                                889999****************999 PP
3zf-C2H218.74.8e-06151175123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                ++C+   Cgk Fs   nL++H++tH
  Oropetium_20150105_15269A 151 FVCHhpGCGKAFSLDFNLRSHLKTH 175
                                89**********************9 PP
4zf-C2H215.93.8e-05181205123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                + Cp   Cgk+F++   L+ H +tH
  Oropetium_20150105_15269A 181 HICPfpTCGKRFTSDFKLTAHVKTH 205
                                679999******************9 PP
5zf-C2H214.30.00012245270123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                y+Cp   C+k + + + L+ H++t H
  Oropetium_20150105_15269A 245 YVCPyeGCDKAYIHCYKLNLHLKTmH 270
                                99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1387118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.38592121IPR007087Zinc finger, C2H2
SMARTSM003550.01392116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-895145No hitNo description
Gene3DG3DSA:3.30.160.601.1E-12119141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0053121145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.274121150IPR007087Zinc finger, C2H2
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-12132184No hitNo description
Gene3DG3DSA:3.30.160.602.2E-17142178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.341151180IPR007087Zinc finger, C2H2
SMARTSM003550.0051151175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153175IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-5175206No hitNo description
Gene3DG3DSA:3.30.160.609.1E-9179205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055181205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18181210IPR007087Zinc finger, C2H2
PROSITE patternPS000280183205IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-6240270No hitNo description
Gene3DG3DSA:3.30.160.606.9E-9241270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.517245275IPR007087Zinc finger, C2H2
SMARTSM003550.044245270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEYPPAVAGS GAYKHYYPPQ QHSHNHSQAL RRPPRPAARW VKQWIPQDLA SSGGKCSLFK  60
WVRADGHKSS KENHKVLDAE APKPEPTSEI LFLCSYENCG KTFVDVSALR KHAHVHGERQ  120
YICQEPNCGK KFVDSSKLKR HHLTHTGQKD FVCHHPGCGK AFSLDFNLRS HLKTHASENY  180
HICPFPTCGK RFTSDFKLTA HVKTHEKTGT PIAVQHTSPP PLPEKPQSTM KSSIPATSSY  240
AERPYVCPYE GCDKAYIHCY KLNLHLKTMH PEHGQEENGK HMAPVQHEPI YQYSYAESGD  300
TAPNPKRSKT SSVHKSSLSK VYNVKVSSAM PADMSGVKNR WSGKATYEDD SEETEEDRGN  360
NLDGGWQYGN NADDEETQDE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34942078119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15269A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136556.10.0uncharacterized protein LOC100216676
SwissprotQ2V3L35e-96YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A3L6EAM60.0A0A3L6EAM6_MAIZE; Putative zinc finger protein
TrEMBLB4FJ720.0B4FJ72_MAIZE; C2H2 transcription factor
STRINGGRMZM2G175000_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-95C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]